PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016449663.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CPP
Protein Properties Length: 634aa    MW: 68928.1 Da    PI: 5.1637
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016449663.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR51.32.4e-16525563240
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     ++k+CnCkkskClk+YCeCfaag++C e C C+dC+Nk 
  XP_016449663.1 525 SCKRCNCKKSKCLKLYCECFAAGVYCVEPCACQDCFNKP 563
                     689**********************************96 PP
2TCR30.19.6e-10611632122
             TCR   1 kekkgCnCkkskClkkYCeCfa 22 
                     ++k+gCnCkks ClkkYCeC++
  XP_016449663.1 611 RHKRGCNCKKSGCLKKYCECYQ 632
                     589******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.6E-17524565IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163431.667525634IPR005172CRC domain
PfamPF036387.5E-12527562IPR005172CRC domain
SMARTSM011140.036611634IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.7E-6613633IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MSTEEEKVSL ERENVVEKES EELVEGRKCV KGGGVKAGVV VVMDTPERKK NQIATPISKF  60
EESPVFNFLN NLSPIKLDKS AHFTQTLNSL SFASIPSVFT SPHVSSIRES RFLRRHLLSD  120
PSKPEFASDN GVKVDTDEGM LDTVNNSIEP KESFGCGISG GEAPASPSHE CSKLAVELAR  180
SLNYECSSPS TLPTGGIRGK SLSEFAGTSV TYVPLVQEIS GKGLLRCEVN MDGTNEIVQD  240
KEEASGCDWE SLITDATDLL IFDSPGDPEA FTKASGPNFR TFEYVSNEMQ NVQHFSQVST  300
SECGGDGSET EKPSTQPGEE SQLKEYADAE NTKPDASLTN DSMCVGQSEK NDNEMVSALY  360
RGMRRRCLVF EMVGPRRKHI DEGSGSSAAQ EADGNVASND KQLVPSKTVN EYPRCTLPGI  420
GLHLNSLTAS SKDGKVVKQE ANASGKQLVI ASGSSINLHS LVTGQESLVK SLPETSRGGE  480
IVPFENSLPL MEDVLQAPGY VNSEEPNQTS PKKKRRRLET GESESCKRCN CKKSKCLKLY  540
CECFAAGVYC VEPCACQDCF NKPIHEDTVL ATRKQIESRN PLAFAPKVIR TTDSLSETTG  600
DDSSKTPASA RHKRGCNCKK SGCLKKYCEC YQVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1352763412106Protein lin-54 homolog
5fd3_B3e-1352763412106Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1510517PKKKRRRL
2511516KKKRRR
3513517KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016449663.10.0PREDICTED: protein tesmin/TSO1-like CXC 2, partial
TrEMBLA0A1S3YCD20.0A0A1S3YCD2_TOBAC; protein tesmin/TSO1-like CXC 2
STRINGXP_009770238.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24672345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-92TESMIN/TSO1-like CXC 2