PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016449593.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 250aa    MW: 28330.7 Da    PI: 4.6817
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016449593.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.2e-135395754
                    HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                      Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A+eYI++L
  XP_016449593.1 53 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIEYIQEL 95
                    57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.3234695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-1847110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.37E-1249100No hitNo description
Gene3DG3DSA:4.10.280.102.0E-1752111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-1552101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-115395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MENIGDEYKN YWETNMFLQN EELDSYFDEA ISAYYDSSSP DGAQSSLASK NIVSERNRRK  60
KLNERLFALR AVVPNISKMD KASIIKDAIE YIQELHEQER RIQAEISELE SGRSKKNTSL  120
EFDQDASFDA KPKRSRRLEQ QYGYDSSGST TRSSPSSSPV EVLELRVSSM GEKTVVVSLT  180
CSKRTDTMVK VCEIFESLNI KIISANITAF SGRLLKTAFI EADEEEKELL KMRIETAIAT  240
LNDPDSPMST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-145195953Transcription factor MYC2
5gnj_B8e-145195953Transcription factor MYC2
5gnj_E8e-145195953Transcription factor MYC2
5gnj_F8e-145195953Transcription factor MYC2
5gnj_G8e-145195953Transcription factor MYC2
5gnj_I8e-145195953Transcription factor MYC2
5gnj_M8e-145195953Transcription factor MYC2
5gnj_N8e-145195953Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2536451e-72AC253645.3 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone slm-51e1 map 7, complete sequence.
GenBankAC2536761e-72AC253676.4 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-50e11 map 7, complete sequence.
GenBankHG9754461e-72HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9755191e-72HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603228.10.0PREDICTED: transcription factor bHLH35-like isoform X2
RefseqXP_016449593.10.0PREDICTED: transcription factor bHLH35-like isoform X2
SwissprotQ2HIV92e-91BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A1S3YC570.0A0A1S3YC57_TOBAC; transcription factor bHLH35-like isoform X2
STRINGXP_009603227.11e-169(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-92bHLH family protein