PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016449547.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 276aa    MW: 31466.3 Da    PI: 6.3092
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016449547.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.61e-20128179256
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                     +y+GVr+++ +g+++AeIrdp   + k +r++lg+f+ta eAaka+++a+ kl+g+
  XP_016449547.1 128 HYRGVRQRP-WGKFAAEIRDP---NrKGTRVWLGTFDTALEAAKAYDRAAFKLRGN 179
                     8********.**********9...6566**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.03E-32127186No hitNo description
Gene3DG3DSA:3.30.730.102.5E-32127187IPR001471AP2/ERF domain
SMARTSM003801.0E-36128192IPR001471AP2/ERF domain
PfamPF008476.7E-15128178IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-23128188IPR016177DNA-binding domain
PROSITE profilePS5103224.184128186IPR001471AP2/ERF domain
PRINTSPR003671.2E-10129140IPR001471AP2/ERF domain
PRINTSPR003671.2E-10152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MASPQENCTT LDLIRQHLFD DAAFMEYYCS EPTTLYSQNS SSSESLDQSF SFEPTLNYAD  60
TAQSSSFEIS SFFDNSKTEF DCSELETIQK QSLNSRKQTS FKERKPSLNI AIPVKQQKVE  120
VVPRGKKHYR GVRQRPWGKF AAEIRDPNRK GTRVWLGTFD TALEAAKAYD RAAFKLRGNK  180
AIVNFPLEVA NFKQEYNNEI PQSANSGRKR VRETENEEQL VINKEMKIEE ERVPTTPLTP  240
SSWSAIWDSG DGKGIFEMPL LSPLSPHLPY SQLVII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-30127189163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0162660.0AB016266.1 Nicotiana sylvestris nserf4 gene for ethylene-responsive element binding factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016449547.10.0PREDICTED: ethylene-responsive transcription factor 5-like
SwissprotQ9LW481e-149ERF5_NICSY; Ethylene-responsive transcription factor 5
TrEMBLA0A1S3YC200.0A0A1S3YC20_TOBAC; ethylene-responsive transcription factor 5-like
STRINGXP_009609461.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.13e-53ERF family protein