PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016449479.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 850aa MW: 97341.8 Da PI: 6.6504

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016449479.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.3	9.8e-27	92	194	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+ e++ +ra +t+Cka+++vk++ dgkw ++++e+ XP_016449479.1 92 FYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYEKSanrprsrqgnkqdPENATGRRACAKTDCKASMHVKRRPDGKWIIHRFEK 186 9*************************************999999899999888776555556699************************ PP FAR1 84 eHnHelap 91 eHnHel p XP_016449479.1 187 EHNHELLP 194 ***975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-24	92	194	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.7E-28	292	384	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.656	572	608	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.8E-6	573	607	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.0E-7	583	610	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 850 aa Download sequence Send to blast
MDIDLRLPSR DHEKEEEEEE QNGIINMLDN VEKMHSDDGM QGMLVVVEEK MHAEDGGDMN 60 TAVANIIEFK EDVNLEPLAG MEFESHGEAY AFYQEYARSM GFNTAIQNSR RSKTSREFID 120 AKFACSRYGT KREYEKSANR PRSRQGNKQD PENATGRRAC AKTDCKASMH VKRRPDGKWI 180 IHRFEKEHNH ELLPAQAVSE QTRRMYAAMA RQFAEYKNVV GLKSDSKGPF EKGRNSAMEG 240 GDINVLLEFF IQMQSLNSNF FYAVDVGEDQ RVRNLFWVDA KARHDYANFS DVVSFDTTYI 300 RNKYKMPLAL FVGVNQHYQF MLLGCALVSD EIATTFSWVM RTWLKAMGGQ APKTVITDHD 360 QVLKSVISEA LPSSLHYFCM WHMLGKVSET LNHVIKQNEK FMAKFEKCIY RSSTDEEFEK 420 RWRKLVDRFD LGEVELIHLL YEDRVKWTPT FMRDAFLAGM STVQRSESVN SFFDKYVHKK 480 TTVQEFVKQY ETILQDRYEE EAKADSDTWN KQPALKSPSP FEKHVAGLYT HTVFKKFQAE 540 VLGAVACIPK REQQDETTIT FSVKDYEKDQ DFIVTLNEVK SEISCVCHLF EFKGYLCRHA 600 LVVLQICGVS SIPLQYILKR WTKDAKSKYS MTDGSEDVQS RVQRYNELCY RAMKLSEEGS 660 LSQESYSFAL RALDDAFGSC VTFNNSNKNI LEAGTSSAPG LLCVEDDNQS RSMSKTNKKK 720 NSFTKKRKVN SEPDVLAVGA ADSLQQMDKL NSRPVTLDGY FGPQQSVQGM VQLNLMAPTR 780 DNYYGNQQTI QGLGQLNSIA PTHDGYYGAQ PTMHGLGQMD FFRAPSFPYG IRDEPNVRSA 840 QLHDEASRHP

Sequence ? help Back to Top

Protein Sequence Length: 850 aa Download sequence Send to blast

MDIDLRLPSR DHEKEEEEEE QNGIINMLDN VEKMHSDDGM QGMLVVVEEK MHAEDGGDMN  60
TAVANIIEFK EDVNLEPLAG MEFESHGEAY AFYQEYARSM GFNTAIQNSR RSKTSREFID  120
AKFACSRYGT KREYEKSANR PRSRQGNKQD PENATGRRAC AKTDCKASMH VKRRPDGKWI  180
IHRFEKEHNH ELLPAQAVSE QTRRMYAAMA RQFAEYKNVV GLKSDSKGPF EKGRNSAMEG  240
GDINVLLEFF IQMQSLNSNF FYAVDVGEDQ RVRNLFWVDA KARHDYANFS DVVSFDTTYI  300
RNKYKMPLAL FVGVNQHYQF MLLGCALVSD EIATTFSWVM RTWLKAMGGQ APKTVITDHD  360
QVLKSVISEA LPSSLHYFCM WHMLGKVSET LNHVIKQNEK FMAKFEKCIY RSSTDEEFEK  420
RWRKLVDRFD LGEVELIHLL YEDRVKWTPT FMRDAFLAGM STVQRSESVN SFFDKYVHKK  480
TTVQEFVKQY ETILQDRYEE EAKADSDTWN KQPALKSPSP FEKHVAGLYT HTVFKKFQAE  540
VLGAVACIPK REQQDETTIT FSVKDYEKDQ DFIVTLNEVK SEISCVCHLF EFKGYLCRHA  600
LVVLQICGVS SIPLQYILKR WTKDAKSKYS MTDGSEDVQS RVQRYNELCY RAMKLSEEGS  660
LSQESYSFAL RALDDAFGSC VTFNNSNKNI LEAGTSSAPG LLCVEDDNQS RSMSKTNKKK  720
NSFTKKRKVN SEPDVLAVGA ADSLQQMDKL NSRPVTLDGY FGPQQSVQGM VQLNLMAPTR  780
DNYYGNQQTI QGLGQLNSIA PTHDGYYGAQ PTMHGLGQMD FFRAPSFPYG IRDEPNVRSA  840
QLHDEASRHP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:17012604, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:18715961, ECO:0000269\|PubMed:22634759}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013715	0.0	BT013715.1 Lycopersicon esculentum clone 132560F, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016449476.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like isoform X1
Refseq	XP_016449477.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like isoform X1
Swissprot	Q9LIE5	0.0	FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBL	A0A1S3YBV2	0.0	A0A1S3YBV2_TOBAC; protein FAR-RED ELONGATED HYPOCOTYL 3-like isoform X1
STRING	XP_009610341.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	0.0	far-red elongated hypocotyls 3

Publications ? help Back to Top
Chang N,Gao Y,Zhao L,Liu X,Gao H Arabidopsis FHY3/CPD45 regulates far-red light signaling and chloroplast division in parallel. Sci Rep, 2015. 5: p. 9612 [PMID:25872642] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Li D, et al. FAR-RED ELONGATED HYPOCOTYL3 activates SEPALLATA2 but inhibits CLAVATA3 to regulate meristem determinacy and maintenance in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9375-80 [PMID:27469166] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]