PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016449440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRF | ||||||||
Protein Properties | Length: 364aa MW: 41280.8 Da PI: 8.6581 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.8 | 5.1e-25 | 78 | 121 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e XP_016449440.1 78 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 121 79***************************************986 PP | |||||||
2 | QLQ | 59.6 | 9e-21 | 11 | 45 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q+q+L++Q+l+yKy+++++PvPp+Ll i+ XP_016449440.1 11 PFTANQWQELEHQALIYKYMVSGMPVPPDLLYTIR 45 8*****************************97776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 5.2E-12 | 10 | 46 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.208 | 11 | 46 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.6E-16 | 11 | 44 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.941 | 78 | 122 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.4E-21 | 79 | 121 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MMSTAARSRF PFTANQWQEL EHQALIYKYM VSGMPVPPDL LYTIRRSMDS SLSSKLVLHQ 60 PHHIGWNCFQ MGFGKKIDPE PGRCRRTDGK KWRCSKEAYP DSKYCERHMH RGRNRSRKPV 120 EIMTTTSTNT STTTRPISTA TNTTAPTAIS ISSINKNTNN ISSSSPTSSL HSFSYLSSTH 180 EPHQYPFLYP HSSSSRPSPA AIGLESSAYS RNGYGDGMKE DVDEHIFFSE TSGTVRSTCG 240 SNSVDDTWQL SPLTMASPMK QRTYSLSQNT GHSASSYLQL QSLNESSKDH HHQYYNDAKS 300 IKLETEDQQH QPKKVMHHFF DEWPKDNKDS WLDSEDKFSG LSKTQLSISI PNPSHDFFIT 360 TNEK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975519 | 8e-81 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009767378.1 | 0.0 | PREDICTED: growth-regulating factor 1-like | ||||
Refseq | XP_016449440.1 | 0.0 | PREDICTED: growth-regulating factor 1-like isoform X2 | ||||
TrEMBL | A0A1S3YB51 | 0.0 | A0A1S3YB51_TOBAC; growth-regulating factor 1-like isoform X2 | ||||
TrEMBL | A0A1U7VLY8 | 0.0 | A0A1U7VLY8_NICSY; growth-regulating factor 1-like | ||||
STRING | XP_009767378.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 1e-60 | growth-regulating factor 5 |