PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016449354.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 212aa MW: 24261 Da PI: 9.8052 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 100 | 4.2e-31 | 51 | 171 | 3 | 116 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaaksaa 95 g+kdrhsk++T +g+RdRR+Rls++ a++++dLq++LG+ ++sk ++WLl++ k++i+el+ ++ +++s+ + +++ +s+ ++ +++ +++ XP_016449354.1 51 GGKDRHSKVCTIRGLRDRRIRLSVSSAIQLYDLQNRLGLGQPSKVVDWLLNATKHEIDELPPLQIPPKSFNqfHQIDDQYFDSTLREISKEITTT 145 79*************************************************************99999555444555555555444445555555 PP TCP 96 kskksqksaasalnlakesr.....a 116 +++++q++ ++++nl + XP_016449354.1 146 NEQENQENINKKRNLPSADCcsgygE 171 66666666666666666444455443 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.14 | 52 | 110 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 7.5E-28 | 52 | 158 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 212 aa Download sequence Send to blast |
MNSSKKNVDQ TNQEAGGTNK NQFSRTPSGS RQQSWTNFQN PRIVRVSRSF GGKDRHSKVC 60 TIRGLRDRRI RLSVSSAIQL YDLQNRLGLG QPSKVVDWLL NATKHEIDEL PPLQIPPKSF 120 NQFHQIDDQY FDSTLREISK EITTTNEQEN QENINKKRNL PSADCCSGYG EKERRDGGRE 180 TTSRGDRVLE VEEIECWKLG IRRDTLLRVA AG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-16 | 57 | 111 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-16 | 57 | 111 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016449354.1 | 1e-156 | PREDICTED: transcription factor TCP5-like | ||||
TrEMBL | A0A1S3YB68 | 1e-155 | A0A1S3YB68_TOBAC; transcription factor TCP5-like | ||||
STRING | XP_009627677.1 | 1e-107 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA821 | 24 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02150.1 | 2e-44 | plastid transcription factor 1 |