PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016449315.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 249aa MW: 27665.9 Da PI: 4.6556 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.5 | 6.3e-08 | 12 | 35 | 23 | 47 |
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W+ Ia +++ gRt++++k++w++ XP_016449315.1 12 RWSQIAGRLP-GRTDNEIKNFWNST 35 5*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.388 | 1 | 40 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.01E-8 | 11 | 44 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-11 | 11 | 37 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.99E-6 | 12 | 36 | No hit | No description |
Pfam | PF00249 | 1.2E-5 | 12 | 35 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MLTPIYFSLF QRWSQIAGRL PGRTDNEIKN FWNSTLKKRL KNSSSSSTPS PNASDSSSEP 60 CKDLNMGVNQ GFMSMEKHKL MAMYMDSTSS SSSSMALNTI IDPLPTLEHS LMNMPSRFGA 120 PSYLTTQPCM AQGGNVTNGS LFYGNNHGIF GGNLGIEGEI YVPPLESVSI EYQNVEVGNI 180 VERRSQNNNP NNNMTNLTSH FNSSSNIKVE NFGGIGNYWE GDDLKVGEWD LEELMKDVSP 240 FPFLDFQIE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016449315.1 | 0.0 | PREDICTED: transcription factor MYB46-like | ||||
TrEMBL | A0A1S3YAS4 | 0.0 | A0A1S3YAS4_TOBAC; transcription factor MYB46-like | ||||
STRING | XP_009765231.1 | 1e-149 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08500.1 | 8e-20 | myb domain protein 83 |