PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016449052.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 226aa    MW: 24716.3 Da    PI: 4.256
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016449052.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS47.62.9e-15155224271
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetse 71 
                     +elLl+cAeavs+  + +a+ l++ l++ +s +g+pmqRl ay++e+++arl++s+s +yk+l+++e ++
  XP_016449052.1 155 KELLLACAEAVSDAYFPAAEVLMNVLEHKVSVSGEPMQRLSAYMLEGIRARLFSSGSIIYKKLKCKEPTN 224
                     689**************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098510.992128226IPR005202Transcription factor GRAS
PfamPF035149.9E-13155224IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MQASQRPMEK VEQYYSPYYV FNNNSNDTSS SGTQFSCQSQ NEQFFTLDSL PAAGYVIYDS  60
PPAVSVSSNW SPFSPQYSQS TISDQHHSSD NTYGSPLSGC SGVDGVLSEM ANKLLGPESD  120
IDDSSCCSFN DVVSEPSSPT KWNRVLEIAS SLDVKELLLA CAEAVSDAYF PAAEVLMNVL  180
EHKVSVSGEP MQRLSAYMLE GIRARLFSSG SIIYKKLKCK EPTNSE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016449052.11e-167PREDICTED: scarecrow-like protein 13, partial
SwissprotQ9M0M56e-44SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A1S3YAM91e-165A0A1S3YAM9_TOBAC; scarecrow-like protein 13
STRINGXP_009629634.11e-149(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.12e-46SCARECROW-like 13