PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016448870.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 377aa    MW: 40589.7 Da    PI: 9.1743
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016448870.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.32.1e-16171217455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  XP_016448870.1 171 VHNLSERRRRDRINEKMRALQELIPRC-----NKTDKASMLDEAIEYLKSLQ 217
                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-21165234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.355167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.20E-18170221No hitNo description
Gene3DG3DSA:4.10.280.103.6E-21171225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-14171217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-18173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
HRFQNFGHFS RLPSRTRSEL GPSNSSKSPR ESTVVESNET PISGPESRVS YVADNVVPVP  60
GGNVGCGAVN VNGTATASAA IREPAATCEL SVTSSPGSGN SINTSAEPPP PPSQTAALAT  120
PTAAASNDRK RKGRETNDGD GQNEEAEFES GDTKKHARGS TSTKRSRAAE VHNLSERRRR  180
DRINEKMRAL QELIPRCNKT DKASMLDEAI EYLKSLQLQV QMMSMGCGMV PMMYPGMQQY  240
MPAMGMGMGM GMGMEIGMNR PMVPYPPLLP GAAMQNAAAA ARMGPRFPMP PFHLPPVPVP  300
DPSRMQASSQ QDPMLHPLVA HNPNQPRLPN FNDPYQQFFG LHQAQVQLPQ NQAVEQQGNN  360
KPGSRKEVGN PGSPQSG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175180ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-139HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016448870.10.0PREDICTED: transcription factor PIF1-like, partial
TrEMBLA0A1S3Y9J20.0A0A1S3Y9J2_TOBAC; transcription factor PIF1-like
STRINGXP_009591396.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40592341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.11e-36phytochrome interacting factor 3-like 5