PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016448734.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 313aa    MW: 35705.2 Da    PI: 7.1002
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016448734.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.57.2e-36211352104
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec..eaesssssa 82 
                     +gkkdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l ++            s ss ++   e++++++++
  XP_016448734.1  21 TGKKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLDELppwnpridaadgS-SSGNNIvlEQQQQQNQQ 114
                     79**************************************************************9999988877643.33333334444444444 PP

             TCP  83 snsssg...........kaaksaakskksqksa 104
                     ++ + +           +            +s+
  XP_016448734.1 115 QEFQLQrqleennpsgnN------------SSN 135
                     422222222222222221............111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.3E-3421136IPR005333Transcription factor, TCP
PROSITE profilePS5136932.7852381IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MKRATGGEIV QVEGGHILRS TGKKDRHSKV YTAKGPRDRR VRLSAHTAIQ FYDVQDRLGY  60
DRPSKAVDWL IKKAKNAIDK LDELPPWNPR IDAADGSSSG NNIVLEQQQQ QNQQQEFQLQ  120
RQLEENNPSG NNSSNSYMMQ THTGGETQSL GDTMKSFFPM NSGTSLMNFQ NYPHEIMPRS  180
ASFQSEDLGL SLHSTTFHDQ NSNHRASSSH DHQTIFSSQN FETNYSRMAG WILPHHQQTL  240
YSQQPQGAVF PQREPLQSNF SQLIHAWEER PPMNHVHHQA EISNRHFISD FQIPARIHGE  300
HEEPSSASPN SHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-222881154Putative transcription factor PCF6
5zkt_B1e-222881154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016448734.10.0PREDICTED: transcription factor TCP4-like isoform X1
TrEMBLA0A1S3Y9I60.0A0A1S3Y9I6_TOBAC; transcription factor TCP4-like isoform X1
STRINGXP_009783352.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66072234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.31e-51TCP family protein