PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016448686.1
Common NameNtmybA2
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 1050aa    MW: 115874 Da    PI: 4.9156
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016448686.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.71.3e-183682148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WTteEde+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
   XP_016448686.1 36 KGQWTTEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 82
                     799****************************9.************986 PP
2Myb_DNA-binding64.91.5e-2088134148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEde +v++vk++G++ W+tIa++++ gR +kqc++rw+++l
   XP_016448686.1  88 KGPWSKEEDEVIVELVKKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 134
                      79******************************.*************97 PP
3Myb_DNA-binding49.88e-16140182145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE++ l++a++ +G++ W+   ++++ gRt++ +k++w+
   XP_016448686.1 140 KEAWTQEEELTLIRAHQIYGNK-WAELTKYLP-GRTDNAIKNHWN 182
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.7233182IPR017930Myb domain
SuperFamilySSF466891.36E-153288IPR009057Homeodomain-like
SMARTSM007175.3E-153584IPR001005SANT/Myb domain
PfamPF002499.2E-163682IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-223794IPR009057Homeodomain-like
CDDcd001677.95E-143982No hitNo description
PROSITE profilePS5129434.00783138IPR017930Myb domain
SuperFamilySSF466896.74E-3285181IPR009057Homeodomain-like
SMARTSM007175.3E-1987136IPR001005SANT/Myb domain
PfamPF002492.1E-1888134IPR001005SANT/Myb domain
CDDcd001678.39E-1790134No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2795142IPR009057Homeodomain-like
PROSITE profilePS5129419.653139189IPR017930Myb domain
SMARTSM007176.3E-15139187IPR001005SANT/Myb domain
PfamPF002494.0E-14140183IPR001005SANT/Myb domain
CDDcd001671.71E-11142182No hitNo description
Gene3DG3DSA:1.10.10.601.8E-21143189IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1050 aa     Download sequence    Send to blast
MESDRISTPS DGTSSSLQRV RPLHGRTSGP TRRSTKGQWT TEEDEILRKA VQRFKGKNWK  60
KIAECFKDRT DVQCLHRWQK VLNPELVKGP WSKEEDEVIV ELVKKYGPKK WSTIAQHLPG  120
RIGKQCRERW HNHLNPGINK EAWTQEEELT LIRAHQIYGN KWAELTKYLP GRTDNAIKNH  180
WNSSVKKKLD SYLASGLLAQ FPALPNVNRQ NQSIPSSAKL QQSSEDDSVR KEGTEMEEAS  240
ECSQGSNLAG CSQSTSDMGN KFVHTREEGK LLEDSNYRKD PSSSSAPCSE YYTPAFEDIT  300
FSMAEVPSEL DESKLLEHTF SHDWAASIGK EWQFNPDDIP NISPLELMQD SSGLFMQCLT  360
GNGNHDMVTF PQQNAVKFET TNVGSMVVGF DKPNEMFTSV EGCRMVYPEA GIPQYIPSEA  420
GTNGADETAD SLICQSSNYQ ISEGGNMSIE NCNPLCSDVM GTSSGQPFSI PSQFSSEQSS  480
LMFGTAANQF HNPXANHFHN PLQGNPAQES HTSNSDGFLY PFESGTPCDN IMDDPLLEEQ  540
LDQTKDSLQL VSVNDFRTTP SNTIQTCPLV NENSSIPVEQ KDGGALYYEP PRFPSLDIPF  600
FSCDLIQSGT DAQQEYSPLG IRQLMMTSVN CLTPFRLWDS PSRDGSTDAV LRSAAKTFTS  660
TPSILKKRHR DLVSPLSEKR CEKKLGSDFR QESFSDLSKD FSRLDVMFDE AANEKATKSS  720
LTTDQTLELE ASSEDKENIN PTEDGSKEED KVRNGLSNER QLDGGEVHYK EKGTREGTKG  780
GANSAIGKIK QPSGVLVELN ASDLFFSPDR FGAKSGRATY LSSKALGNQY ARRLEAASNQ  840
GSVSSSFETS CFSVICSPRI RGKKDGSSFI ITTSMQSAPA PTALDNSAET SGNGVGAETV  900
SISGETPYKR SIESPSAWKS PWFINSLLSS PRLDNELNFE DLALFMSPGD RSYDAIGLMK  960
QLSEQTAGAF ADAQEVLGGE TPESILRGRN SKNQKADENH SLLSANVMSE RRTLDFSECG  1020
SPGKGKETEN FCTSNNSFSS PSSYLLKGCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-69361896159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-69361896159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0561230.0AB056123.1 Nicotiana tabacum NtmybA2 mRNA for Myb, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312096.10.0myb-related protein 3R-1-like
TrEMBLA0A1S3Y8N50.0A0A1S3Y8N5_TOBAC; myb-related protein 3R-1-like
STRINGXP_009595014.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.10.0myb domain protein 3r-4