PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016448644.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 290aa    MW: 32716.6 Da    PI: 5.1683
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016448644.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.5e-1993142255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae Aa a+++a+++++g
  XP_016448644.1  93 RYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEAAAVAYDEAALRFKG 142
                     8********.**********94....45************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.93E-2292151No hitNo description
SMARTSM003806.3E-3793156IPR001471AP2/ERF domain
PfamPF008472.1E-1293142IPR001471AP2/ERF domain
PROSITE profilePS5103225.0893150IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2293151IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-3293151IPR001471AP2/ERF domain
PRINTSPR003672.8E-1194105IPR001471AP2/ERF domain
PRINTSPR003672.8E-11116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MERGDFSSNE MEEKENNDNI DHPQLQEEPY NIYSARSQHD MSAMVSVLSQ VIGNSTTHSS  60
SANVTPLTLP QSAVALQNQS QSIEDQGNSR RKRYRGVRQR PWGKWAAEIR DPKKAARVWL  120
GTFETAEAAA VAYDEAALRF KGNKAKLNFP EKVQGKFQYL PTNTSQDHHL PNDIVAQQYI  180
PTTSNNNHPL PFQEHYPSLH HYAQLLQNDS NITDLNFGIS PSYNQQLSGS FDFSQSSSNS  240
TLSELPPLTL QSSYKQEEEV FMSFSSDFGT SSSSCAPHES NWEDFEDRKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2692153163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780575.10.0PREDICTED: ethylene-responsive transcription factor ERF113
RefseqXP_016448644.10.0PREDICTED: ethylene-responsive transcription factor ERF113-like
TrEMBLA0A1S3Y9C10.0A0A1S3Y9C1_TOBAC; ethylene-responsive transcription factor ERF113-like
TrEMBLA0A1U7X2820.0A0A1U7X282_NICSY; ethylene-responsive transcription factor ERF113
STRINGXP_009780575.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.13e-40ERF family protein