PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016448568.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 135aa MW: 15267.6 Da PI: 11.2171

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016448568.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.1	5.3e-15	54	106	4	56
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +++rr++kNRe+A rsR+RK+a++ eLe v +Le+eN +L ke e +ke XP_016448568.1 54 QQKQRRMIKNRESAARSRERKQAYTVELESLVTQLEEENARLLKEEAEKNKER 106 689************************************99876544433333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.2E-14	50	113	No hit	No description
SMART	SM00338	1.6E-11	51	115	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.0E-13	53	108	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.001	53	105	IPR004827	Basic-leucine zipper domain
CDD	cd14707	2.43E-17	55	101	No hit	No description
SuperFamily	SSF57959	6.88E-11	55	105	No hit	No description
PROSITE pattern	PS00036	0	58	73	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MGNCQFPMAM QNGPLMGFGN GVVAIAGSGS GSGGSGRGKR RSTVEELPLD KATQQKQRRM 60 IKNRESAARS RERKQAYTVE LESLVTQLEE ENARLLKEEA EKNKERLKQI MENLIPVVEK 120 RRPPRVLRRV RSMSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009783835.1	3e-91	PREDICTED: G-box-binding factor 4-like
Refseq	XP_016448568.1	7e-93	PREDICTED: G-box-binding factor 4-like
Swissprot	Q0JHF1	4e-34	BZP12_ORYSJ; bZIP transcription factor 12
TrEMBL	A0A1S3Y9B1	1e-91	A0A1S3Y9B1_TOBAC; G-box-binding factor 4-like
TrEMBL	A0A1U7XBK8	6e-90	A0A1U7XBK8_NICSY; G-box-binding factor 4-like
STRING	XP_009783835.1	1e-90	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2771	24	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03970.1	5e-24	G-box binding factor 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]