PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016448467.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WOX | ||||||||
Protein Properties | Length: 185aa MW: 21247.8 Da PI: 9.619 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 49.2 | 8.7e-16 | 5 | 64 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql +L+e+++k +p+a++ ++ +++l +++++ ++WFqN++a+ekk XP_016448467.1 5 TRWSPTPEQLMTLQEMYRKgLTNPNAAQLQRVTDHLslfgKIETKFFFYWFQNHKAREKK 64 8*****************99***************************************8 PP | |||||||
2 | Wus_type_Homeobox | 93.9 | 1.4e-30 | 4 | 65 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +tRW+PtpeQ++ L+e+y++Gl +Pn++++qr+t +L+ +Gkie k fyWFQN+kaRe++k XP_016448467.1 4 HTRWSPTPEQLMTLQEMYRKGLTNPNAAQLQRVTDHLSLFGKIETKFFFYWFQNHKAREKKK 65 69**********************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.426 | 1 | 65 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.5E-4 | 2 | 69 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.01E-8 | 4 | 71 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.4E-13 | 5 | 64 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-5 | 6 | 65 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MSGHTRWSPT PEQLMTLQEM YRKGLTNPNA AQLQRVTDHL SLFGKIETKF FFYWFQNHKA 60 REKKKLKKKL LMQMNQQQQM SMNNDLDCSN NLPLFTSSAR LMAEVEDAST RLMNSLRNMN 120 PPIPTKCDME TCMMRAQGPH FILMMDIVPN PTSLPCISSN TPLKTLELFP VTSSSSLKDL 180 AKEIS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 61 | 69 | EKKKLKKKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016448467.1 | 1e-136 | PREDICTED: WUSCHEL-related homeobox 3-like | ||||
TrEMBL | A0A1S3Y8T6 | 1e-135 | A0A1S3Y8T6_TOBAC; WUSCHEL-related homeobox 3-like | ||||
STRING | XP_009766251.1 | 1e-135 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2959 | 19 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 9e-26 | WOX family protein |