PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016448454.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 285aa MW: 32233 Da PI: 8.4784 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.6 | 1.3e-38 | 40 | 100 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprC+s+ntkfCyynnyslsqPr+fCk+C+ryWt+GG++rnvPvGgg+rknkk + XP_016448454.1 40 QQQSLKCPRCNSSNTKFCYYNNYSLSQPRHFCKSCKRYWTRGGTIRNVPVGGGCRKNKKIK 100 6899******************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 2.2E-33 | 42 | 98 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 5.0E-24 | 43 | 94 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.283 | 44 | 98 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 46 | 82 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MLVGDCEKMV QISSTTNEIW PQQNNESRDI EKSISQDQQQ QQSLKCPRCN SSNTKFCYYN 60 NYSLSQPRHF CKSCKRYWTR GGTIRNVPVG GGCRKNKKIK KPNITTTNPS HNFHQPQIID 120 LPPIIPNHSN PNLFYGFPTN PSDLNTQFPR LLNSRVSNTE NLGLGFSSGQ IQDAMTTTNS 180 NSHLSSYPIL NSTLSSLIAS NLQQQHFISN NNKFQDLCPY SCEGGNWIML KGVKMEGENQ 240 NRLDWNISNH QINQIEQINS VDPSLSWAGT YVDPSNIESS VRSLI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016448454.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.4-like | ||||
TrEMBL | A0A1S3Y8V9 | 0.0 | A0A1S3Y8V9_TOBAC; dof zinc finger protein DOF1.4-like | ||||
STRING | XP_009631842.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65590.1 | 5e-31 | Dof family protein |