PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016448393.1
Common NameWRAF1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 195aa    MW: 21462.8 Da    PI: 5.3491
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016448393.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.51.1e-2066115255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa+a+++a+ +++g
  XP_016448393.1  66 NYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFNTAEDAARAYDKAAIEFRG 115
                     59*******.**********94....36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.82966123IPR001471AP2/ERF domain
PfamPF008472.9E-1466115IPR001471AP2/ERF domain
SMARTSM003805.1E-3866129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-3266123IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2266123IPR016177DNA-binding domain
CDDcd000183.11E-3366122No hitNo description
PRINTSPR003674.1E-126778IPR001471AP2/ERF domain
PRINTSPR003674.1E-1289105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
IEQGNVVSPI LGVPAEQEPC PFCRIKGCLG CDIFGTTSNA AAVVAADDNK KNSTTTTAVT  60
KKKKKNYRGV RQRPWGKWAA EIRDPRKAAR VWLGTFNTAE DAARAYDKAA IEFRGPRAKL  120
NFSFADYTEI QEQQSASSSS PQQLPEPQLQ QGNNTEFGNE IWDQLMGDNE IQDWLTMMNF  180
NGDSSDSTGG NVHSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2465122159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-2463122262ATERF1
3gcc_A3e-2463122262ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740210.0AB274021.1 Nicotiana tabacum WRAF1 mRNA for wound-responsive AP2 like factor 1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312081.11e-145ethylene-responsive transcription factor ERF109-like
RefseqXP_009803667.11e-145PREDICTED: ethylene-responsive transcription factor ERF109-like
TrEMBLA0A1U7YHT41e-144A0A1U7YHT4_NICSY; ethylene-responsive transcription factor ERF109-like
TrEMBLA4F2481e-144A4F248_TOBAC; Wound-responsive AP2 like factor 1
STRINGXP_009803667.11e-145(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.18e-25redox responsive transcription factor 1