PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016448263.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 283aa    MW: 31740.6 Da    PI: 6.3737
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016448263.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like932.5e-29227279153
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 
                     k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQ Y
  XP_016448263.1 227 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQVY 279
                     68*************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.916224283IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-24224279IPR009057Homeodomain-like
SuperFamilySSF466892.96E-14225280IPR009057Homeodomain-like
TIGRFAMsTIGR015576.8E-25227281IPR006447Myb domain, plants
PfamPF002493.0E-6229279IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MMSSPSELSL ECKPHQSYSM LLKSFGEKID QTQNLEEFVA RLEEERVKID AFKRELPLCM  60
QLLTNAMEAS RQQLQSYREN QGRKPVLEEF IPLKNNNASG EGDEKNISNT TDHNKANWMT  120
SAQLWSPGSE EIKEKSTLTS FKETTDMGIS KLALDNNFSS PTLALASTKQ SIGIVEDNKN  180
LETVNNYSGK DNSILEQGKG ASTINLQPDS QSTGAVTNST STQQHRKARR CWSPDLHRRF  240
VNALQMLGGS QVATPKQIRE LMKVDGLTND EVKSHLQVYI NQL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754515e-54HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755245e-54HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016448263.10.0PREDICTED: two-component response regulator-like APRR2
SwissprotQ9ZQ857e-78EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A1S3Y7V50.0A0A1S3Y7V5_TOBAC; two-component response regulator-like APRR2
STRINGXP_009630682.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87942229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.13e-80G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]