PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016448087.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 159aa    MW: 18013.5 Da    PI: 4.8755
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016448087.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.91.4e-19957149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    krie+k +r++tf+kRr+g++KKA+EL   Cda++avi fs  g+++ +
  XP_016448087.1  9 KRIEDKAKRHTTFTKRRQGLFKKAKELVKRCDAQAAVITFSLAGNVFAF 57
                    79******************************************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.591161IPR002100Transcription factor, MADS-box
SMARTSM004325.4E-24160IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-16323IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.94E-24374IPR002100Transcription factor, MADS-box
PfamPF003193.1E-191057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-163859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MVRTKVEIKR IEDKAKRHTT FTKRRQGLFK KAKELVKRCD AQAAVITFSL AGNVFAFGHP  60
SVDDIVNRYI VATSAPEGDE IPVHKETEKK DKDVVIENNV DQEDEETTSF ELPVGDMGME  120
ELEEFEVAMV EMKKKVVDRI NGIISSSKEE DLGLPYIQV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755132e-55HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009617757.11e-113PREDICTED: agamous-like MADS-box protein AGL61
RefseqXP_009617758.11e-113PREDICTED: agamous-like MADS-box protein AGL61
RefseqXP_016448087.11e-113PREDICTED: agamous-like MADS-box protein AGL61
RefseqXP_016448088.11e-113PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A1S3Y7W11e-111A0A1S3Y7W1_TOBAC; agamous-like MADS-box protein AGL61
STRINGXP_009617757.11e-112(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.11e-19M-type_MADS family protein