PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016448076.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 235aa    MW: 26765.2 Da    PI: 7.0331
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016448076.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.1e-1660109255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr++    +Wv+eIr+p   +k+ r++lg+f t+e Aa+a++ a+++l+g
  XP_016448076.1  60 FYRGVRRRN-GDKWVCEIREP---NKKSRIWLGTFSTPEIAARAHDVAALALRG 109
                     7*****877.9*********9...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.93160117IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-2060118IPR016177DNA-binding domain
SMARTSM003809.1E-3160123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-3061119IPR001471AP2/ERF domain
PRINTSPR003671.4E-76172IPR001471AP2/ERF domain
PfamPF008471.3E-1061109IPR001471AP2/ERF domain
CDDcd000182.06E-3061119No hitNo description
PRINTSPR003671.4E-78399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MNFEDDQTSN SSCSSSDHDI LDKEKNFNLS SYSMNVIIKP SLHNKRRAGR KKFKETRHPF  60
YRGVRRRNGD KWVCEIREPN KKSRIWLGTF STPEIAARAH DVAALALRGT KASLNFPESS  120
WSLPKAQSSS PHDIQIAALQ VSNKVVSSPL KPSMSYLKLE ESSCFQSPKD DQENSLKGYN  180
DSCELMEFVD EEAMFNMPIL IDSMAEGMLM TPPAMKRGFN WGDVEENVEF TLWKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-14581171272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755131e-47HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016448076.11e-176PREDICTED: dehydration-responsive element-binding protein 1F-like
SwissprotA2WZI47e-54DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z57e-54DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLA0A1S3Y7621e-175A0A1S3Y762_TOBAC; dehydration-responsive element-binding protein 1F-like
STRINGXP_009624061.11e-175(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.17e-43C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]