PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016447957.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 757aa    MW: 83276.8 Da    PI: 5.7748
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016447957.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox665e-2189144156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r++ +++t++q++eLe++F+++++p+ ++r+eL+++lgL+  q+k+WFqN+R+++k
  XP_016447957.1  89 RKRYHRHTQHQIQELEAYFKECPHPDDKQRKELSRELGLEPLQIKFWFQNKRTQMK 144
                     789999***********************************************999 PP
2START204.73.8e-642774971206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++e+v++a  +ep+W+ s     + +n++e+ ++f+++ +     +++ea+r+++vv+m++++lve+l+d++  W+ ++     +a+t+
  XP_016447957.1 277 ELAVAAMEEFVQMAHMQEPLWFPSIengtSLLNEEEYFRIFPRGIGpkpdgFKTEASRETAVVIMNHVNLVEILMDVN-HWSSMFSgvvsRASTI 370
                     57899********************999999************999********************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     +v+s+g      galq++ ae q++sp vp R+ +f+Ry++   +g+w++vdvS+d+ +  p    ++R++++pSg+li++++ng+skvtwveh+
  XP_016447957.1 371 DVLSTGvagnfnGALQVILAEIQVPSPQVPtRECYFARYCKHRVDGTWAVVDVSLDHLRAIP----SARCRRRPSGCLIQEMPNGYSKVTWVEHI 461
                     ************************************************************99....5**************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++++ +h ++++lv+sgla+gak+w atl+rqce+
  XP_016447957.1 462 EVDDSAVHDIYKPLVSSGLAFGAKRWIATLDRQCER 497
                     **********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-2368144IPR009057Homeodomain-like
SuperFamilySSF466898.36E-2076147IPR009057Homeodomain-like
PROSITE profilePS5007117.32986146IPR001356Homeobox domain
CDDcd000867.80E-2088147No hitNo description
SMARTSM003899.4E-2088150IPR001356Homeobox domain
PfamPF000461.4E-1889144IPR001356Homeobox domain
PROSITE patternPS000270121144IPR017970Homeobox, conserved site
SuperFamilySSF559618.61E-35268499No hitNo description
PROSITE profilePS5084842.907268500IPR002913START domain
CDDcd088753.44E-123272496No hitNo description
SMARTSM002345.0E-61277497IPR002913START domain
PfamPF018522.0E-53278497IPR002913START domain
Gene3DG3DSA:3.30.530.201.1E-6373496IPR023393START-like domain
SuperFamilySSF559615.4E-26520747No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MPSRISRRAN KMSSLVVNDG TDIGFSSSGL PLGQSSSMMD SQLHSLDMLS NTSESEMPRL  60
SSEDFGSKSG NEGNSGGDEQ DVNNKSLKRK RYHRHTQHQI QELEAYFKEC PHPDDKQRKE  120
LSRELGLEPL QIKFWFQNKR TQMKTKNERS ENSQLRAENE KLRAENLRFR EALGNVSCPN  180
CGGQQPPIGE MSYDEHHLRL ENTRLREEIE RISNIASKYV GKPFSNHNNG YSPSLDLRVP  240
AFSPPQSVNG DAYGDGEDII ISSIIGPTDA EKPFIIELAV AAMEEFVQMA HMQEPLWFPS  300
IENGTSLLNE EEYFRIFPRG IGPKPDGFKT EASRETAVVI MNHVNLVEIL MDVNHWSSMF  360
SGVVSRASTI DVLSTGVAGN FNGALQVILA EIQVPSPQVP TRECYFARYC KHRVDGTWAV  420
VDVSLDHLRA IPSARCRRRP SGCLIQEMPN GYSKVTWVEH IEVDDSAVHD IYKPLVSSGL  480
AFGAKRWIAT LDRQCERLAS AMATNFPTND LSNMVLTNQD SRKSMLKLAE RMVNSFCSGV  540
SATAGNQWTT LSGSGTDDNV RVMTRKSVDD PGRPPGIVLS AATSFWLPIS PKRVFDFLRD  600
ENTRSEWDIL SNGGIVQEMA HIANGRETGN CVSLLRVNSS NSSQSNMLIL QESSTDPTNS  660
YVIYAPVDIA AMNIVLGGGD PDFVALLPSG FAILPDGPPG NSRVGCGGSL LTVAFQILVD  720
SIPTAKLSLG SVATVNNLIA CTVDRIKAAL LSESTPS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009766038.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like
RefseqXP_016447957.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A1S3Y7I30.0A0A1S3Y7I3_TOBAC; homeobox-leucine zipper protein HDG2-like
TrEMBLA0A1U7VI760.0A0A1U7VI76_NICSY; homeobox-leucine zipper protein HDG2-like
STRINGXP_009766038.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2