PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016447821.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 106aa    MW: 12670.8 Da    PI: 10.9504
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016447821.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.18.7e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien++nrqvt+skRrngi+KKA+EL vLCda+++++++sst k++ey s
  XP_016447821.1  9 KKIENSTNRQVTYSKRRNGIIKKAKELTVLCDAKISLLMLSSTRKFHEYTS 59
                    78***********************************************75 PP
2K-box19.15.4e-0871106136
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqR 36 
                     yq++ g++ +++++e++q++l++Lk+ +++L+re+R
  XP_016447821.1  71 YQRTLGVDIWSTHYERMQENLKRLKEINNKLRREIR 106
                     67788999**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.427161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-36160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-36296IPR002100Transcription factor, MADS-box
CDDcd002652.56E-35280No hitNo description
PRINTSPR004041.8E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.8E-211057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512976.61784106IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MGRGKIEIKK IENSTNRQVT YSKRRNGIIK KAKELTVLCD AKISLLMLSS TRKFHEYTSP  60
NTTQKKMIDQ YQRTLGVDIW STHYERMQEN LKRLKEINNK LRREIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-16161161MEF2C
5f28_B6e-16161161MEF2C
5f28_C6e-16161161MEF2C
5f28_D6e-16161161MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ5394141e-112DQ539414.1 Solandra maxima TM6 (TM6) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798453.14e-71PREDICTED: floral homeotic protein DEFICIENS-like
RefseqXP_016447821.12e-72PREDICTED: floral homeotic protein DEFICIENS-like
RefseqXP_018627682.12e-71PREDICTED: floral homeotic protein PMADS 1-like isoform X2
SwissprotQ003J22e-60TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A1S3Y6I64e-71A0A1S3Y6I6_TOBAC; floral homeotic protein DEFICIENS-like
TrEMBLA0A1U7Y5P69e-70A0A1U7Y5P6_NICSY; floral homeotic protein DEFICIENS-like
STRINGXP_009798453.11e-70(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23142451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-46MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]