PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016447733.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRF

Protein Properties

Length: 325aa MW: 37084.9 Da PI: 9.313

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016447733.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78	9.3e-25	70	113	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e XP_016447733.1 70 DPEPGRCRRTDGKKWRCSKEAYADSKYCERHMHRGRNRSRKPVE 113 79***************************************997 PP
2	QLQ	60.9	3.4e-21	9	43	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q+q+L++Q+l+yKy+a+++PvPp+Ll i+ XP_016447733.1 9 PFTATQWQELEHQALIYKYMASGMPVPPDLLYTIR 43 9*****************************97776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	5.9E-12	8	44	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.278	9	44	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.1E-16	9	42	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.658	70	114	IPR014977	WRC domain
Pfam	PF08879	5.5E-21	71	113	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MSRARSGYPF TATQWQELEH QALIYKYMAS GMPVPPDLLY TIRRSLDSSN HQPQHIGWNC 60 FQLGFGKKID PEPGRCRRTD GKKWRCSKEA YADSKYCERH MHRGRNRSRK PVEVMTTRTT 120 NTNTTPPTAI TISSIKKNSN NYSPSTPASF SYSSEPQHSF LYPHSSSSRP PGNIGLSSQD 180 QTKFLFDSGA YSRSASGSTS IDDNSWELAP LTMGSPLGHS KQRTYSVSQT GESYLQLQSF 240 NESSRQQQQR QDQYNYYALG NDVKADLHMK IDTEDHQQPK KVMHHFFDEL PPDQHNKDSW 300 LDSKTHLSIS VPDSSRDFFI THNGK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975446	3e-74	HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBank	HG975519	3e-74	HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009615805.1	0.0	PREDICTED: growth-regulating factor 1-like
Refseq	XP_016447733.1	0.0	PREDICTED: growth-regulating factor 1-like
TrEMBL	A0A1S3Y645	0.0	A0A1S3Y645_TOBAC; growth-regulating factor 1-like
STRING	XP_009615805.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA743	23	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	2e-54	growth-regulating factor 5