PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016447582.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 167aa MW: 18959 Da PI: 7.3005 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.2 | 2.9e-18 | 115 | 167 | 2 | 54 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 rk+ ++tkeq +Lee F+++++++ +++ LAk+lgL rqV vWFqNrRa+ XP_016447582.1 115 RKKLRLTKEQSAVLEENFKEHSTLNPKQKLALAKRLGLRARQVEVWFQNRRAR 167 678899*********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 78.3 | 1.3e-25 | 115 | 167 | 1 | 53 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRAR 53 +kk+rl+keq+++LEe+F+e+++L+p++K +la++Lgl++rqv+vWFqnrRAR XP_016447582.1 115 RKKLRLTKEQSAVLEENFKEHSTLNPKQKLALAKRLGLRARQVEVWFQNRRAR 167 69**************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 2.9E-23 | 2 | 89 | IPR006712 | HD-ZIP protein, N-terminal |
SuperFamily | SSF46689 | 5.99E-17 | 103 | 167 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-17 | 106 | 165 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.957 | 111 | 167 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.5E-8 | 113 | 167 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.5E-16 | 115 | 167 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.16E-13 | 115 | 167 | No hit | No description |
PRINTS | PR00031 | 1.6E-5 | 142 | 151 | IPR000047 | Helix-turn-helix motif |
PRINTS | PR00031 | 1.6E-5 | 151 | 167 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MEDLGLSLSL SFPQNRTVTN LIRKTSWTDN SFPSSDRNSE TCRVETKTFL KGIDVNRLPE 60 TADAEEEAGV SSPNSTISSV SGNKRNDREA NCEEHDMERA CSRGISDEED GETCRKKLRL 120 TKEQSAVLEE NFKEHSTLNP KQKLALAKRL GLRARQVEVW FQNRRAR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009590779.1 | 1e-118 | PREDICTED: homeobox-leucine zipper protein HAT4-like | ||||
Refseq | XP_016447582.1 | 1e-120 | PREDICTED: homeobox-leucine zipper protein HAT4-like | ||||
Swissprot | P46600 | 2e-54 | HAT1_ARATH; Homeobox-leucine zipper protein HAT1 | ||||
TrEMBL | A0A1S3Y6M4 | 1e-118 | A0A1S3Y6M4_TOBAC; homeobox-leucine zipper protein HAT4-like | ||||
STRING | XP_009590779.1 | 1e-117 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1118 | 24 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16780.1 | 6e-40 | homeobox protein 2 |
Publications ? help Back to Top | |||
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