PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016447462.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 465aa MW: 51996.2 Da PI: 8.1337 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57 | 4.7e-18 | 52 | 102 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +g+WvAeIr+p + r r++lg+f ta +Aa a+++ + +++g XP_016447462.1 52 CKYRGVRQRT-WGKWVAEIREP---N-RgSRIWLGTFSTALDAALAYDEVAISMYG 102 79*****999.**********8...3.35**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.47E-30 | 52 | 111 | No hit | No description |
Pfam | PF00847 | 6.7E-12 | 52 | 102 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.035 | 53 | 110 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-34 | 53 | 116 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-19 | 53 | 111 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.3E-30 | 53 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-9 | 54 | 65 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-9 | 76 | 92 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence Send to blast |
MKKPMNGRMP SRNLLARWKE QNTSLDSMRK APAKGSKKGC MKGKGGPDNQ NCKYRGVRQR 60 TWGKWVAEIR EPNRGSRIWL GTFSTALDAA LAYDEVAISM YGSRARLNLP NYISPNMSLS 120 APSNLDCVST ITSTHSEMTI DVHSGEKGCS SISGYCIESK NVATHGYCLD KLPRSFNFIH 180 WVCEDCKSRE CQECAGIRSN LFSSSGVEAN VGPKLKRKVN PTLGDECIHE AMEDILEINP 240 AKELKPLTGL SDVVDYGSPL DVNKVTDCTD MKNGIMNISQ SNHGGKLNLG GNKYQGNCSN 300 IFSGDVHQST TDYLQYALLP ESHQCAEPVI NPTWSGSFNI LNGDHGTLDG IVARISSRAC 360 KKVYDEACFF PSTLQLEIVP KSIVWPKNFL RSEPSDDIIA LYFFPKDARD VAKFDDLVDE 420 MIHQRLAMRT VVKNAELLVF TSMDLPRRHW RFQGKHYLWG VFREE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-20 | 54 | 110 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016447448.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 2B-like isoform X1 | ||||
TrEMBL | A0A1S3Y5C1 | 0.0 | A0A1S3Y5C1_TOBAC; dehydration-responsive element-binding protein 2B-like isoform X1 | ||||
STRING | XP_009776426.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05410.2 | 6e-32 | DRE-binding protein 2A |