PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016447456.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 485aa    MW: 54256.8 Da    PI: 7.9005
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016447456.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95e-1877127155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++y+GVr++  +g+WvAeIr+p   + r  r++lg+f ta +Aa a+++ + +++g
  XP_016447456.1  77 CKYRGVRQRT-WGKWVAEIREP---N-RgSRIWLGTFSTALDAALAYDEVAISMYG 127
                     79*****999.**********8...3.35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.1E-1277127IPR001471AP2/ERF domain
CDDcd000183.05E-3077136No hitNo description
PROSITE profilePS5103221.03578135IPR001471AP2/ERF domain
SMARTSM003801.3E-3478141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-3078136IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-1978136IPR016177DNA-binding domain
PRINTSPR003672.0E-97990IPR001471AP2/ERF domain
PRINTSPR003672.0E-9101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MSTIIHESVT SSDVQFFNCI SLPLEMKKPM NGRMPSRNLL ARWKEQNTSL DSMRKAPAKG  60
SKKGCMKGKG GPDNQNCKYR GVRQRTWGKW VAEIREPNRG SRIWLGTFST ALDAALAYDE  120
VAISMYGSRA RLNLPNYISP NMSLSAPSNL DCVSTITSTH SEMTIDVHSG EKGCSSISGY  180
CIESKNVATH GYCLDKLPRS FNFIHWVCED CKSRECQECA GIRSNLFSSS GVEANVGPKL  240
KRKVNPTLGD ECIHEAMEDI LEINPAKELK PLTGLSDVVD YGSPLDVNKD MKNGIMNISQ  300
SNHGGKLNLG GNKYQGNCSN IFSGDVHQST TDYLQYALLP ESHQCAEPVI NPTWSGSFNI  360
LNGDHGTLDG IVARISSRAC KKVYDEACFF PSTLQLEIVP KSIVWPKNFL RSEPSDDIIA  420
LYFFPKDARD VAKFDDLVDE MIHQRLAMRT VVKNAELLVF TSMDLPRRHW RFQGKHYLWG  480
VFREE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2079135360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776426.10.0PREDICTED: uncharacterized protein LOC104226206
RefseqXP_016447456.10.0PREDICTED: uncharacterized protein LOC107772453 isoform X2
TrEMBLA0A1S3Y5L60.0A0A1S3Y5L6_TOBAC; uncharacterized protein LOC107772453 isoform X2
TrEMBLA0A1U7WGP00.0A0A1U7WGP0_NICSY; uncharacterized protein LOC104226206
STRINGXP_009776426.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.28e-32DRE-binding protein 2A