PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016447448.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 490aa    MW: 54776.3 Da    PI: 7.7392
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016447448.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.1e-1877127155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++y+GVr++  +g+WvAeIr+p   + r  r++lg+f ta +Aa a+++ + +++g
  XP_016447448.1  77 CKYRGVRQRT-WGKWVAEIREP---N-RgSRIWLGTFSTALDAALAYDEVAISMYG 127
                     79*****999.**********8...3.35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.2E-1277127IPR001471AP2/ERF domain
CDDcd000183.23E-3077136No hitNo description
PROSITE profilePS5103221.03578135IPR001471AP2/ERF domain
SMARTSM003801.3E-3478141IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-1978136IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-2978136IPR001471AP2/ERF domain
PRINTSPR003672.0E-97990IPR001471AP2/ERF domain
PRINTSPR003672.0E-9101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MSTIIHESVT SSDVQFFNCI SLPLEMKKPM NGRMPSRNLL ARWKEQNTSL DSMRKAPAKG  60
SKKGCMKGKG GPDNQNCKYR GVRQRTWGKW VAEIREPNRG SRIWLGTFST ALDAALAYDE  120
VAISMYGSRA RLNLPNYISP NMSLSAPSNL DCVSTITSTH SEMTIDVHSG EKGCSSISGY  180
CIESKNVATH GYCLDKLPRS FNFIHWVCED CKSRECQECA GIRSNLFSSS GVEANVGPKL  240
KRKVNPTLGD ECIHEAMEDI LEINPAKELK PLTGLSDVVD YGSPLDVNKV TDCTDMKNGI  300
MNISQSNHGG KLNLGGNKYQ GNCSNIFSGD VHQSTTDYLQ YALLPESHQC AEPVINPTWS  360
GSFNILNGDH GTLDGIVARI SSRACKKVYD EACFFPSTLQ LEIVPKSIVW PKNFLRSEPS  420
DDIIALYFFP KDARDVAKFD DLVDEMIHQR LAMRTVVKNA ELLVFTSMDL PRRHWRFQGK  480
HYLWGVFREE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2079135360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016447448.10.0PREDICTED: dehydration-responsive element-binding protein 2B-like isoform X1
TrEMBLA0A1S3Y5C10.0A0A1S3Y5C1_TOBAC; dehydration-responsive element-binding protein 2B-like isoform X1
STRINGXP_009776426.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA289522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.27e-32DRE-binding protein 2A