PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016447393.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 471aa    MW: 53149 Da    PI: 6.3061
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016447393.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS467.57.6e-143474681374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl+cA++vssg++e+a+ +L ++ +lasp+gd+mqR+a+yfteALa r++rs+s+++kal++++ s   +se + ++k+f+e +P+lk+++
  XP_016447393.1  47 LIHLLLACANHVSSGSFENANIALDHICQLASPNGDTMQRIASYFTEALADRILRSWSGICKALRSTKLS--VVSEDILVRKMFFEFFPFLKVAF 139
                     689*************************************************************999998..69********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +++NqaI ea+ege++vHi+D+++s++lQW aLlq L++Rpegpp+lRiTgv++    +ke l ++++ L++ Ae+l++pf+fn  v+++ledl+
  XP_016447393.1 140 VVTNQAIIEAMEGEKMVHIVDLNASEPLQWRALLQDLSARPEGPPHLRITGVHQ----QKEVLDQMAHVLTEEAEKLDIPFQFNQ-VVSQLEDLD 229
                     ******************************************************....9**************************.799****** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll.......................................................desvsleserdevLkl 230
                     +e+Lr+k+gEala+++v+qlh+l+                                                       + +++++ + d +L++
  XP_016447393.1 230 VEKLRIKTGEALAISSVMQLHTLFahdnepqkksplpfkhsngvnlhkalinqntlgellekdmghiangyspsndtasSPPLCSTTKMDGFLNA 324
                     **************************************************************************99966555556668999**** PP

            GRAS 231 vkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325
                     +++lsPkv+vv+eq+++hn+ +++er++e+l+yy+alfd+le  lpr+s er kvE++llg+ei+nv++ceg er+erhe+lekW +r++ aGF+
  XP_016447393.1 325 LWGLSPKVMVVTEQDSNHNGITLMERLSESLHYYAALFDCLEFALPRTSLERLKVEKMLLGEEIKNVISCEGIERKERHEKLEKWFQRFDVAGFG 419
                     *********************************************************************************************** PP

            GRAS 326 pvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +vpls++a+ qa++ll+ ++ +gy+++ee+g++v++W+dr+L+svS+Wr
  XP_016447393.1 420 NVPLSYYAMLQARRLLQSYSCEGYKIKEENGCVVICWHDRALFSVSSWR 468
                     ************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.2621448IPR005202Transcription factor GRAS
PfamPF035142.6E-14047468IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MLQDDGSSSV TSSSPLQIFP MMSLSPGFSS SNQWLKELKS EERGLYLIHL LLACANHVSS  60
GSFENANIAL DHICQLASPN GDTMQRIASY FTEALADRIL RSWSGICKAL RSTKLSVVSE  120
DILVRKMFFE FFPFLKVAFV VTNQAIIEAM EGEKMVHIVD LNASEPLQWR ALLQDLSARP  180
EGPPHLRITG VHQQKEVLDQ MAHVLTEEAE KLDIPFQFNQ VVSQLEDLDV EKLRIKTGEA  240
LAISSVMQLH TLFAHDNEPQ KKSPLPFKHS NGVNLHKALI NQNTLGELLE KDMGHIANGY  300
SPSNDTASSP PLCSTTKMDG FLNALWGLSP KVMVVTEQDS NHNGITLMER LSESLHYYAA  360
LFDCLEFALP RTSLERLKVE KMLLGEEIKN VISCEGIERK ERHEKLEKWF QRFDVAGFGN  420
VPLSYYAMLQ ARRLLQSYSC EGYKIKEENG CVVICWHDRA LFSVSSWRCR K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-37354707381Protein SCARECROW
5b3h_A2e-37354706380Protein SCARECROW
5b3h_D2e-37354706380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016447393.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A1S3Y5610.0A0A1S3Y561_TOBAC; scarecrow-like protein 3
STRINGXP_009593291.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29142453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]