PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016447278.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 142aa MW: 16248 Da PI: 4.8629 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.7 | 5.4e-08 | 24 | 68 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+ E + + +a + + ++ +W ++a++++ g+t +++ + XP_016447278.1 24 KWTPAENKAFENALAFFDKDtpdRWQRVAEMVP-GKTVVDVIRQYK 68 8********************************.******998886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.1E-9 | 21 | 73 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.54E-12 | 23 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.34E-7 | 24 | 70 | No hit | No description |
Pfam | PF00249 | 8.2E-7 | 24 | 69 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MEILSPAPYL SNSSWFLDEE KSTKWTPAEN KAFENALAFF DKDTPDRWQR VAEMVPGKTV 60 VDVIRQYKEL EDDVSRIEAG LITIPGYTTT SSSPFTLEWG NSHSSFDGYK QSYVVGGKRS 120 LSNRPPEQER KKGIPWTEEE HK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 9e-17 | 25 | 98 | 11 | 84 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 1e-142 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009603384.1 | 1e-101 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_009603385.1 | 1e-101 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_016432478.1 | 1e-101 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_016447278.1 | 1e-102 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 2e-65 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A1S3WXT5 | 2e-99 | A0A1S3WXT5_TOBAC; transcription factor DIVARICATA-like | ||||
TrEMBL | A0A1S3Y4W5 | 1e-100 | A0A1S3Y4W5_TOBAC; transcription factor DIVARICATA-like | ||||
STRING | XP_009603384.1 | 1e-100 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 7e-58 | MYB family protein |
Publications ? help Back to Top | |||
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