PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016447182.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TALE | ||||||||
Protein Properties | Length: 426aa MW: 47095 Da PI: 5.5566 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.7 | 8.5e-08 | 375 | 408 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + XP_016447182.1 375 KWPYPTEEDKAKLVQETGLQLKQINNWFINQRKR 408 569*****************************87 PP | |||||||
2 | ELK | 27.7 | 6.3e-10 | 329 | 350 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++L+++++E++ XP_016447182.1 329 ELKHELKQGYKEKLVDIREEIL 350 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 4.2E-18 | 167 | 211 | IPR005540 | KNOX1 |
Pfam | PF03790 | 6.4E-17 | 169 | 210 | IPR005540 | KNOX1 |
SMART | SM01256 | 4.0E-28 | 219 | 274 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.4E-20 | 223 | 273 | IPR005541 | KNOX2 |
Pfam | PF03789 | 2.2E-6 | 329 | 350 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.144 | 329 | 349 | IPR005539 | ELK domain |
SMART | SM01188 | 9.2E-4 | 329 | 350 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.742 | 349 | 412 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-11 | 351 | 416 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.19E-16 | 351 | 415 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.99E-12 | 352 | 413 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-25 | 356 | 413 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.0E-17 | 369 | 408 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MAYNPNHMSQ EMDMHHFSDE NSAVLRSILP EQLAQSSPDV KPLDHQQPPT WLNSAILRQE 60 SHYTGTGGRG AGENFLNLHS NSESSAAASQ ASNQWLSRSI LQRNVSDVQT SNNSSAVMAA 120 TDLKNDDGNN NNDNGNNNAG GQLTDSEVVG GGGGGGGTDG ILNWQNAGYK AEILAHPLFE 180 QLLSAHVACL RIATPVDQLP RIDAQLAQSQ QVVAKYSSLG QNIGDDKELD QFLTHYVLLL 240 CSFKEQLQQH VRVHAMEAVM ACWEIEQSLQ SLTGVSPGEG TGATMSDDED DQVDSEANLF 300 DGSLDGHDGM GFGLPTESER SLMERVRQEL KHELKQGYKE KLVDIREEIL RKRRAGKLPG 360 DTTSVLKAWW QSHAKWPYPT EEDKAKLVQE TGLQLKQINN WFINQRKRNW HSNPSSSTTS 420 KSKRKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 7e-13 | 352 | 416 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 405 | 425 | RKRNWHSNPSSSTTSKSKRKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB004797 | 0.0 | AB004797.1 Nicotiana tabacum NTH23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009784534.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 3 isoform X1 | ||||
Refseq | XP_009784535.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 3 isoform X2 | ||||
Refseq | XP_009784536.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 3 isoform X3 | ||||
Refseq | XP_016447182.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 3 isoform X1 | ||||
Refseq | XP_016447183.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 3 isoform X2 | ||||
Swissprot | P48000 | 0.0 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A1S3Y5L0 | 0.0 | A0A1S3Y5L0_TOBAC; homeobox protein knotted-1-like 3 isoform X1 | ||||
TrEMBL | A0A1U7X4C6 | 0.0 | A0A1U7X4C6_NICSY; homeobox protein knotted-1-like 3 isoform X1 | ||||
STRING | XP_009784535.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1432 | 24 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.2 | 1e-176 | KNOTTED1-like homeobox gene 3 |
Publications ? help Back to Top | |||
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