PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016446941.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 671aa    MW: 75188.9 Da    PI: 6.4726
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016446941.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.41.2e-22111211198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++ +k+a+e+       ++ +++  +l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF +   +
  XP_016446941.1 111 FCKILTASDTSTHGGFSVLRKHANEClplldmtQLTPTQ--DLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLR--GD 201
                     99****************************988777766..7************************************************3..37 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++ l+v+v+r
  XP_016446941.1 202 NGDLRVGVRR 211
                     7778**9998 PP
2Auxin_resp102.84.3e-34237316183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++t++ F v+Y+Pr+  s+F++ ++k+++a+++ +svGmRf+m+fe+eds+err++Gt+vgv d+++ +W++SkWrsLk
  XP_016446941.1 237 ASHAITTQTLFVVYYKPRT--SQFIIGLNKYLEAVSHGFSVGMRFRMRFEGEDSPERRFTGTIVGVGDISS-QWSESKWRSLK 316
                     789***************6..9**********************************************777.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.28E-39103240IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-39105226IPR015300DNA-binding pseudobarrel domain
CDDcd100177.36E-20109211No hitNo description
SMARTSM010193.0E-20111213IPR003340B3 DNA binding domain
PfamPF023621.2E-20111211IPR003340B3 DNA binding domain
PROSITE profilePS5086311.843111213IPR003340B3 DNA binding domain
PfamPF065076.4E-32237316IPR010525Auxin response factor
SuperFamilySSF542773.48E-13549632No hitNo description
PROSITE profilePS5174526.111556648IPR000270PB1 domain
PfamPF023092.2E-7602646IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MESDAMYTEL WKACAGPLVD VPRTGERVYY FPQGHIEQLE ASTNQALKQQ IPQFNLPSKI  60
LCRVVHVQLL AETETDEVYA QITLHPEAVQ DEPSSPDPCP PDLPKHAVHS FCKILTASDT  120
STHGGFSVLR KHANECLPLL DMTQLTPTQD LVAKDLHGYE WRFKHIFRGQ PRRHLLTTGW  180
STFVTSKRLV AGDAFVFLRG DNGDLRVGVR RLARQQSHMP QSVISSQNMH LGVLATASHA  240
ITTQTLFVVY YKPRTSQFII GLNKYLEAVS HGFSVGMRFR MRFEGEDSPE RRFTGTIVGV  300
GDISSQWSES KWRSLKIQWD EPASIVRPDR VSPWEIEPSV APTSIDVAQP GIKIKRPRPL  360
ELPHTDISAA SAASPFWYPG SGPTLEVSHV GSIADNQLYW SSEQNSSLSN GVSNTSCRTH  420
LSEAWQHSML ANGSLNMLRD SIEDNKQLTT RSALLDYGSP MSSRASKGLL LDQVNRGNKH  480
EISSTCRLFG IDLRNNSNNT PTSEKDAPNI TSNYADGSEA DKDQNVEHFN PSEEKKQVQL  540
EALLKDTHKQ CLTSSRTRTK VQMQGVCVGR AVDLTGLSGY DDLIIELEKI FDIKGELCPR  600
NKWEVVYTDD EGDMMLVGDD PWLEFCKMVR RIFIYSSEEV KKMSPRCKLP ILSLEGEGTM  660
PSVDSELKSE R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-173333816354Auxin response factor 1
4ldw_A1e-173333816354Auxin response factor 1
4ldw_B1e-173333816354Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1354358KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-107HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016446938.10.0PREDICTED: auxin response factor 11-like isoform X1
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A1S3Y3X90.0A0A1S3Y3X9_TOBAC; Auxin response factor
STRINGXP_009590536.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61830.10.0auxin response factor 18