PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016446923.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 500aa    MW: 56803.6 Da    PI: 4.8267
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016446923.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS271.33e-831174852373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgd....pmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPil 91 
                     ++lLl  Aea+++g+l la+ ++ rl+++ s + +    p+ Rla yft++L  + ++ s++el ++ + +     +ss++++a+++++e+sP++
  XP_016446923.1 117 TDLLLMGAEAIEAGNLDLASVVVLRLNTILSDQENtensPIDRLALYFTQGLLYKSLStSSHELLNQNQFQ----PESSSSITAFQMLQEISPYV 207
                     5789999********************99766664455599**********97665551444444333333....4578999************* PP

            GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     kf+h+taNqaIlea++g+++vHi+Dfdi +G+QWp+L+  L +R +   slRiT+v+  +++++  +++tg+rL++fA+++++pf ++ +  ++ 
  XP_016446923.1 208 KFAHFTANQAILEATKGSQQVHILDFDILEGIQWPPLMVDLVERGNINSSLRITAVVV-DKNNSFLVQKTGKRLQEFADSINLPFMYDQVFLTKD 301
                     *********************************************************9.667999************************866666 PP

            GRAS 187 edleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsleaklp 276
                     edl  e++  v+++ +l+ n++++  +++++  sl +    + + +++lsPkvvv+ve+e    ++  + sF+e f+eal++y+++ ds+  +++
  XP_016446923.1 302 EDL--ENIqGVESHNNLIANVMIHQLHIPQRGSSLVK---IFFNGLRRLSPKVVVLVEEElfnlTKIPTMSFVEFFCEALHHYTTISDSILGGFG 391
                     665..777246669*********9999*988888888...9*******************7554455778********************66666 PP

            GRAS 277 res.eerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369
                          + +++E+e+lg +i ++v +  +e+ er    ekW+e l +  GF+++p+s++++ qak+l++ ++  gy v++e+  l l+Wk+rpL++
  XP_016446923.1 392 GGYkLALRVIEKEFLGVRILDCVRQFPSEKSER----EKWSEGLYSlKGFRQIPMSSSNVRQAKHLVSLFS-GGYWVQNEHCKLALCWKSRPLTT 481
                     65538999********************96666....56***997658***********************.89********************* PP

            GRAS 370 vSaW 373
                     +S W
  XP_016446923.1 482 ASIW 485
                     **** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.46590467IPR005202Transcription factor GRAS
PfamPF035141.0E-80117485IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MEYENFQPTY MNPFLEYSNL ETTFSLKNSS INPHCSIQDF VTVVNDVDIQ DYFQNDFDFI  60
DRDVDFPVQN SQKFPLFSSQ VLVQEDTGFL KEGKKLRVYS PELKLLQDQL MEETSITDLL  120
LMGAEAIEAG NLDLASVVVL RLNTILSDQE NTENSPIDRL ALYFTQGLLY KSLSTSSHEL  180
LNQNQFQPES SSSITAFQML QEISPYVKFA HFTANQAILE ATKGSQQVHI LDFDILEGIQ  240
WPPLMVDLVE RGNINSSLRI TAVVVDKNNS FLVQKTGKRL QEFADSINLP FMYDQVFLTK  300
DEDLENIQGV ESHNNLIANV MIHQLHIPQR GSSLVKIFFN GLRRLSPKVV VLVEEELFNL  360
TKIPTMSFVE FFCEALHHYT TISDSILGGF GGGYKLALRV IEKEFLGVRI LDCVRQFPSE  420
KSEREKWSEG LYSLKGFRQI PMSSSNVRQA KHLVSLFSGG YWVQNEHCKL ALCWKSRPLT  480
TASIWVPTSS SSSPSSSISF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-4212448927382Protein SCARECROW
5b3h_A5e-4212448926381Protein SCARECROW
5b3h_D5e-4212448926381Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016446923.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A1S3Y3W40.0A0A1S3Y3W4_TOBAC; nodulation-signaling pathway 2 protein-like
STRINGXP_009761269.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA133661417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.12e-44GRAS family protein