PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016446782.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 695aa    MW: 77772.9 Da    PI: 4.5444
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016446782.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.41.2e-4841311128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lppGfrFhPtd el+++yLk+k+ gkkl++ e+i+e++iyk+ PwdLp k ++k+++ ewyfF++r++kya+g r nrat++gyWk+tgkd+ + 
  XP_016446782.1   4 LPPGFRFHPTDVELIMYYLKRKIMGKKLHF-EAITELNIYKFSPWDLPdKcCYKSKDLEWYFFCPRERKYASGARMNRATETGYWKTTGKDRYIN 97 
                     79**************************99.89***************6545666777************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++ vg  ktLvf++g+ p+g++tdWv+hey++
  XP_016446782.1  98 Y-DEKIVGSVKTLVFHQGHPPRGQRTDWVIHEYKF 131
                     9.999****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-582154IPR003441NAC domain
PROSITE profilePS5100554.9574154IPR003441NAC domain
PfamPF023652.4E-245130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MARLPPGFRF HPTDVELIMY YLKRKIMGKK LHFEAITELN IYKFSPWDLP DKCCYKSKDL  60
EWYFFCPRER KYASGARMNR ATETGYWKTT GKDRYINYDE KIVGSVKTLV FHQGHPPRGQ  120
RTDWVIHEYK FEDKELADAG FAQDSYVLCK VFQKSGPGPK NGAQYGAPFK EADWEDDEIP  180
AEPCTSDVLC APPRRPDNKN YSIESETSMV NPGSTSGLPS SQPSPSLSSI QRMPLDEPNI  240
EVLGEPHPSN VSPINWMPSD KLDNEGVAGE SNPSNIFSAL PVLPEKQSLI DTSMINRGPG  300
PSNARLCTNK MPLDEQDDEI IGLLAHFTED TTLLSDGNEN NQNLENFNQD MNALPDPFTD  360
GNDIFDGLGH IENWEGLGQS RSDLSASWRA SYSLNPMILP KDAAYMELND LEIPLDHSAG  420
TIETGRLAPS NLSAPYKSNI DVQQFCFGNN SLGINQDFCE NQLPMLPESY TQQVNHSDMV  480
YNYYQNNVSQ GYNAATNFSV SSYKHPEESS RLAAQNMERG VQQRKFYLSI FALCGGSLIL  540
VKAEVILGID GCTNDALSVI LGDLFNSSIF ALCGGSFIFV KAEVTLEIDG CTDEALSVIL  600
GGLSCVFTCQ SNVGKADISK DGKADISKEV LEPLRFGFSL ALCFSHLNKL WYNLFWEFYE  660
FIFLKILLNQ LQVIFQVVCC FIFIPILACY VVLLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-44415415168Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016446782.10.0PREDICTED: NAC domain-containing protein 82-like
RefseqXP_016446783.10.0PREDICTED: NAC domain-containing protein 82-like
TrEMBLA0A1S3Y3J80.0A0A1S3Y3J8_TOBAC; NAC domain-containing protein 82-like
STRINGXP_009604550.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA60502334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.13e-82NAC domain containing protein 103