PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016446755.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LSD | ||||||||
Protein Properties | Length: 145aa MW: 15174.8 Da PI: 7.9177 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.3 | 1.2e-13 | 28 | 52 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V XP_016446755.1 28 CSGCRNLLLYPVGATSVCCAVCNAV 52 ************************9 PP | |||||||
2 | zf-LSD1 | 46.8 | 4.8e-15 | 67 | 91 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV XP_016446755.1 67 CGGCHTLLMYIRGATSVQCSCCHTV 91 ************************9 PP | |||||||
3 | zf-LSD1 | 41.9 | 1.7e-13 | 105 | 129 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V XP_016446755.1 105 CGNCRMLLMYQYGARSVKCAVCNFV 129 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.90.10.10 | 2.4E-4 | 23 | 126 | No hit | No description |
TIGRFAMs | TIGR01053 | 9.8E-13 | 25 | 55 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 4.46E-5 | 28 | 126 | IPR011031 | Multihaem cytochrome |
Pfam | PF06943 | 1.4E-10 | 28 | 52 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 8.7E-15 | 64 | 93 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.3E-12 | 67 | 91 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.0E-12 | 102 | 132 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.0E-12 | 105 | 129 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MPVPLAPYPT PPTPFTPPAN GTQSQLVCSG CRNLLLYPVG ATSVCCAVCN AVTAVPPPGT 60 EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLAMEANQV AHVNCGNCRM LLMYQYGARS 120 VKCAVCNFVT SVGVSTSTIE QKLNS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010787 | 3e-47 | AP010787.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0012J05, complete sequence. | |||
GenBank | HG975447 | 3e-47 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. | |||
GenBank | HG975520 | 3e-47 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009590862.1 | 1e-100 | PREDICTED: protein LOL1 isoform X1 | ||||
Refseq | XP_009590863.1 | 1e-100 | PREDICTED: protein LOL1 isoform X1 | ||||
Refseq | XP_009590864.1 | 1e-100 | PREDICTED: protein LOL1 isoform X1 | ||||
Refseq | XP_009590865.1 | 1e-100 | PREDICTED: protein LOL1 isoform X1 | ||||
Refseq | XP_016446750.1 | 1e-100 | PREDICTED: protein LOL1 isoform X1 | ||||
Refseq | XP_016446751.1 | 1e-100 | PREDICTED: protein LOL1 isoform X1 | ||||
Refseq | XP_016446752.1 | 1e-100 | PREDICTED: protein LOL1 isoform X1 | ||||
Refseq | XP_016446754.1 | 1e-100 | PREDICTED: protein LOL1 isoform X1 | ||||
Refseq | XP_016446755.1 | 1e-100 | PREDICTED: protein LOL1 isoform X1 | ||||
Swissprot | Q93ZB1 | 7e-81 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | A0A1S3Y3N5 | 4e-99 | A0A1S3Y3N5_TOBAC; protein LOL1 isoform X1 | ||||
STRING | XP_009590862.1 | 1e-100 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 4e-67 | lsd one like 1 |
Publications ? help Back to Top | |||
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