PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016446700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 240aa MW: 26351.9 Da PI: 7.8256 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.1 | 2.8e-12 | 56 | 102 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr l+P++ K++Ka+ L +++ +k+L XP_016446700.1 56 KSHSEAERRRRERINAHLATLRNLVPSS-----DKMDKAALLAEVICQVKQL 102 58*************************8.....7**********99999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.11 | 53 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-13 | 56 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-13 | 56 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.7E-10 | 56 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-11 | 59 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 9.3E-6 | 141 | 184 | No hit | No description |
CDD | cd04873 | 6.52E-7 | 141 | 199 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MNCQISGNLG GFYENEANGV PQNLVLDSEK GELVKASGRV GKKTGKSEGK SIAALKSHSE 60 AERRRRERIN AHLATLRNLV PSSDKMDKAA LLAEVICQVK QLKETASHVS ESFFIPLDSD 120 EIRVETIAEN AGDGTCLFKA SICCEYRPEL LSDLRQVINS LNVNLVKSEI STLGSRVKNI 180 FVFTNVIDGG HANIEAREIL LTSARHAFSS VLDKVSAFPE YSTYSNKRQR ISCFDTSSLL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 61 | 66 | ERRRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016446700.1 | 1e-176 | PREDICTED: transcription factor bHLH30-like | ||||
TrEMBL | A0A1S3Y3J0 | 1e-175 | A0A1S3Y3J0_TOBAC; transcription factor bHLH30-like | ||||
STRING | XP_009624214.1 | 1e-174 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6730 | 22 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 4e-37 | bHLH family protein |