PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016446660.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 574aa MW: 64297.5 Da PI: 8.3318

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016446660.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.6	7.5e-10	271	308	5	42
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 k rr+++NReAA++sR+RKka++++Le L++ XP_016446660.1 271 KTLRRLAQNREAAKKSRLRKKAYVQQLESSRIRLSQLE 308 7789***********************98655555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.9E-7	265	313	No hit	No description
SMART	SM00338	3.8E-7	267	344	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.151	269	313	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.14E-7	271	313	No hit	No description
CDD	cd14708	1.41E-22	271	323	No hit	No description
Pfam	PF00170	2.6E-7	271	309	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	274	289	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.8E-31	352	426	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence Send to blast
MCMCTHILCF DKKALIFIAP HSSSLVFSFC SRRRIRNRGR IIQQVSNFLS FSNSITSLNI 60 FSNQKPKNGL KGVCMASEGI GETGLTNSGP SNLHNMPYAV FRGLNPASTS FMYHSTPNNQ 120 EGSFDFGELE EAFALQGFKI NNDEAKASLY AAATGKPAAT LDMFPSWPMR FQETPRENSK 180 SREEEISTDS GSLSSRAQGH LEPESPISRK ASSEQNQLQI TQQQQQQQLH QEMSSDNNPR 240 IENLQTELAS KPNTEKRKGA GSTSERMADP KTLRRLAQNR EAAKKSRLRK KAYVQQLESS 300 RIRLSQLEQE LQRARSQGVF LGGGTSAGAN ISSGAALFDM EYSRWLDDDH RHMSELRTAL 360 QTHLSDGDLR LIVDGYIAHY DEIFSLKGVA AKCDVFHLIT GMWTTPAERC FLWMGGFRPS 420 ELIKMLIGQL DPLTEQQLMG IYSLQQSSQQ AEEALSQGLE QLQQSLINTV ASGSINDGMH 480 HMALALGKLS NLEGFVRQAD NLRQQTLHQL HRILTVRQAA RCFLVIGEYY GRLRALSSLW 540 LSRPRETLIP DDSSCQTTTE LQMVRSSQNH FSNF

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence Send to blast

MCMCTHILCF DKKALIFIAP HSSSLVFSFC SRRRIRNRGR IIQQVSNFLS FSNSITSLNI  60
FSNQKPKNGL KGVCMASEGI GETGLTNSGP SNLHNMPYAV FRGLNPASTS FMYHSTPNNQ  120
EGSFDFGELE EAFALQGFKI NNDEAKASLY AAATGKPAAT LDMFPSWPMR FQETPRENSK  180
SREEEISTDS GSLSSRAQGH LEPESPISRK ASSEQNQLQI TQQQQQQQLH QEMSSDNNPR  240
IENLQTELAS KPNTEKRKGA GSTSERMADP KTLRRLAQNR EAAKKSRLRK KAYVQQLESS  300
RIRLSQLEQE LQRARSQGVF LGGGTSAGAN ISSGAALFDM EYSRWLDDDH RHMSELRTAL  360
QTHLSDGDLR LIVDGYIAHY DEIFSLKGVA AKCDVFHLIT GMWTTPAERC FLWMGGFRPS  420
ELIKMLIGQL DPLTEQQLMG IYSLQQSSQQ AEEALSQGLE QLQQSLINTV ASGSINDGMH  480
HMALALGKLS NLEGFVRQAD NLRQQTLHQL HRILTVRQAA RCFLVIGEYY GRLRALSSLW  540
LSRPRETLIP DDSSCQTTTE LQMVRSSQNH FSNF

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT693387	0.0	KT693387.1 Capsicum annuum AILZ1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016446660.1	0.0	PREDICTED: transcription factor TGA2-like isoform X1
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A1S3Y3E9	0.0	A0A1S3Y3E9_TOBAC; transcription factor TGA2-like isoform X1
STRING	XP_009623541.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3683	23	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-179	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]