PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016446532.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LSD

Protein Properties

Length: 447aa MW: 48441.7 Da PI: 4.2853

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016446532.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	39	1.3e-12	358	382	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL YP GA++V+C++C+tV XP_016446532.1 358 CGSCRQLLTYPQGAKLVKCSCCQTV 382 ************************9 PP
2	zf-LSD1	44.2	3.2e-14	396	420	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP+GApsVRC++C ++ XP_016446532.1 396 CGGCAVLLMYPYGAPSVRCSSCRHM 420 **********************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	7.6E-16	355	385	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.7E-10	358	382	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	7.8E-10	393	421	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.0E-11	396	419	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MEENLNNIEE EEEEDEGPPP GFDSLAHTTN DETDEDEGPP PGWPSNPQQQ NQQLLLTTDV 60 EMGSREHESE DDEDGPPPGW NAVIPQKDSP STLRGTAAVT CDIEMEKKEE VVEDEDNGPP 120 PGWELTPQLQ PLQTSTPPSG TQQALLADTA MEKKGEVVED ENNGPPPGWQ LTPQLQPLQT 180 STPPSGTQQA LLADIKMEKK EEVAEDEDNG PPPGWQLIPQ LQPLQTSTPP LGTQQTLLAA 240 LAFVDVEMGS KQQCAVEKEG HPPGSSIPMA GHSSPPTPPP QSSSSVASSE MEMGSKQEGT 300 KNEEVRPPIE KQEGTKNEEV RPPIEKQPTS HLSRIKPTAP QSSLPATTSS AEMGQMVCGS 360 CRQLLTYPQG AKLVKCSCCQ TVNFVLEAHE VGQVKCGGCA VLLMYPYGAP SVRCSSCRHM 420 TKIGAHNRRP PLSVQQARRR HPSYQVH

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MEENLNNIEE EEEEDEGPPP GFDSLAHTTN DETDEDEGPP PGWPSNPQQQ NQQLLLTTDV  60
EMGSREHESE DDEDGPPPGW NAVIPQKDSP STLRGTAAVT CDIEMEKKEE VVEDEDNGPP  120
PGWELTPQLQ PLQTSTPPSG TQQALLADTA MEKKGEVVED ENNGPPPGWQ LTPQLQPLQT  180
STPPSGTQQA LLADIKMEKK EEVAEDEDNG PPPGWQLIPQ LQPLQTSTPP LGTQQTLLAA  240
LAFVDVEMGS KQQCAVEKEG HPPGSSIPMA GHSSPPTPPP QSSSSVASSE MEMGSKQEGT  300
KNEEVRPPIE KQEGTKNEEV RPPIEKQPTS HLSRIKPTAP QSSLPATTSS AEMGQMVCGS  360
CRQLLTYPQG AKLVKCSCCQ TVNFVLEAHE VGQVKCGGCA VLLMYPYGAP SVRCSSCRHM  420
TKIGAHNRRP PLSVQQARRR HPSYQVH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	2e-45	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016446532.1	0.0	PREDICTED: protein piccolo-like isoform X5
TrEMBL	A0A1S3Y3I1	0.0	A0A1S3Y3I1_TOBAC; protein piccolo-like isoform X5
STRING	XP_009765270.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	5e-36	lsd one like 2