PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016446531.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LSD
Protein Properties Length: 478aa    MW: 51721.3 Da    PI: 4.1642
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016446531.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD138.91.4e-12389413125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+Cr lL YP GA++V+C++C+tV
  XP_016446531.1 389 CGSCRQLLTYPQGAKLVKCSCCQTV 413
                     ************************9 PP

2zf-LSD144.13.5e-14427451125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     CggC +lL+YP+GApsVRC++C ++
  XP_016446531.1 427 CGGCAVLLMYPYGAPSVRCSSCRHM 451
                     **********************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010538.3E-16386416IPR005735Zinc finger, LSD1-type
PfamPF069431.9E-10389413IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010538.5E-10424452IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-11427450IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MEENLNNIEE EEEEDEGPPP GFDSLAHTTN DETDEDEGPP PGWPSNPQQQ NQQLLLTTDV  60
EMGSREHESE DDEDGPPPGW NAVIPQKDSP STLRGTAAVT CDIEMEKKEE IVEDEDNGPP  120
PGWELAPQLQ PLQTSTSPSG TLQTLLADIE MEKKEEVVED EDNGPPPGWE LTPQLQPLQT  180
STPPSGTQQA LLADTAMEKK GEVVEDENNG PPPGWQLTPQ LQPLQTSTPP SGTQQALLAD  240
IKMEKKEEVA EDEDNGPPPG WQLIPQLQPL QTSTPPLGTQ QTLLAALAFV DVEMGSKQQC  300
AVEKEGHPPG SSIPMAGHSS PPTPPPQSSS SVASSEMEMG SKQEGTKNEE VRPPIEKQPT  360
SHLSRIKPTA PQSSLPATTS SAEMGQMVCG SCRQLLTYPQ GAKLVKCSCC QTVNFVLEAH  420
EVGQVKCGGC AVLLMYPYGA PSVRCSSCRH MTKIGAHNRR PPLSVQQARR RHPSYQVH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754412e-45HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016446531.10.0PREDICTED: protein piccolo-like isoform X4
TrEMBLA0A1S3Y3290.0A0A1S3Y329_TOBAC; protein piccolo-like isoform X4
STRINGXP_009765270.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.18e-36lsd one like 2