PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016446531.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LSD | ||||||||
Protein Properties | Length: 478aa MW: 51721.3 Da PI: 4.1642 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 38.9 | 1.4e-12 | 389 | 413 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL YP GA++V+C++C+tV XP_016446531.1 389 CGSCRQLLTYPQGAKLVKCSCCQTV 413 ************************9 PP | |||||||
2 | zf-LSD1 | 44.1 | 3.5e-14 | 427 | 451 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP+GApsVRC++C ++ XP_016446531.1 427 CGGCAVLLMYPYGAPSVRCSSCRHM 451 **********************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 8.3E-16 | 386 | 416 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.9E-10 | 389 | 413 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 8.5E-10 | 424 | 452 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.1E-11 | 427 | 450 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009617 | Biological Process | response to bacterium |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MEENLNNIEE EEEEDEGPPP GFDSLAHTTN DETDEDEGPP PGWPSNPQQQ NQQLLLTTDV 60 EMGSREHESE DDEDGPPPGW NAVIPQKDSP STLRGTAAVT CDIEMEKKEE IVEDEDNGPP 120 PGWELAPQLQ PLQTSTSPSG TLQTLLADIE MEKKEEVVED EDNGPPPGWE LTPQLQPLQT 180 STPPSGTQQA LLADTAMEKK GEVVEDENNG PPPGWQLTPQ LQPLQTSTPP SGTQQALLAD 240 IKMEKKEEVA EDEDNGPPPG WQLIPQLQPL QTSTPPLGTQ QTLLAALAFV DVEMGSKQQC 300 AVEKEGHPPG SSIPMAGHSS PPTPPPQSSS SVASSEMEMG SKQEGTKNEE VRPPIEKQPT 360 SHLSRIKPTA PQSSLPATTS SAEMGQMVCG SCRQLLTYPQ GAKLVKCSCC QTVNFVLEAH 420 EVGQVKCGGC AVLLMYPYGA PSVRCSSCRH MTKIGAHNRR PPLSVQQARR RHPSYQVH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 2e-45 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016446531.1 | 0.0 | PREDICTED: protein piccolo-like isoform X4 | ||||
TrEMBL | A0A1S3Y329 | 0.0 | A0A1S3Y329_TOBAC; protein piccolo-like isoform X4 | ||||
STRING | XP_009765270.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 8e-36 | lsd one like 2 |