PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016446530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LSD | ||||||||
Protein Properties | Length: 488aa MW: 52955.6 Da PI: 4.1836 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 38.8 | 1.5e-12 | 399 | 423 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL YP GA++V+C++C+tV XP_016446530.1 399 CGSCRQLLTYPQGAKLVKCSCCQTV 423 ************************9 PP | |||||||
2 | zf-LSD1 | 44 | 3.5e-14 | 437 | 461 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP+GApsVRC++C ++ XP_016446530.1 437 CGGCAVLLMYPYGAPSVRCSSCRHM 461 **********************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 8.5E-16 | 396 | 426 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.9E-10 | 399 | 423 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 8.7E-10 | 434 | 462 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.1E-11 | 437 | 460 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009617 | Biological Process | response to bacterium |
Sequence ? help Back to Top |
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Protein Sequence Length: 488 aa Download sequence Send to blast |
MEENLNNIEE EEEEDEGPPP GFDSLAHTTN DETDEDEGPP PGWPSNPQQQ NQQLLLTTDV 60 EMGSREHESE DDEDGPPPGW NAVIPQKDSP STLRGTAAVT CDIEMEKKEE IVEDEDNGPP 120 PGWELAPQLQ PLQTSTSPSG TLQTLLADIE MEKKEEVVED EDNGPPPGWE LTPQLQPLQT 180 STPPSGTQQA LLADTAMEKK GEVVEDENNG PPPGWQLTPQ LQPLQTSTPP SGTQQALLAD 240 IKMEKKEEVA EDEDNGPPPG WQLIPQLQPL QTSTPPLGTQ QTLLADVEMG SKQQCAVEKE 300 GHPPGSSIPM AGHSSPPTPP PQSSSSVASS EMEMGSKQEG TKNEEVRPPI EKQEGTKNEE 360 VRPPIEKQPT SHLSRIKPTA PQSSLPATTS SAEMGQMVCG SCRQLLTYPQ GAKLVKCSCC 420 QTVNFVLEAH EVGQVKCGGC AVLLMYPYGA PSVRCSSCRH MTKIGAHNRR PPLSVQQARR 480 RHPSYQVH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 2e-45 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016446530.1 | 0.0 | PREDICTED: protein piccolo-like isoform X3 | ||||
TrEMBL | A0A1S3Y321 | 0.0 | A0A1S3Y321_TOBAC; protein piccolo-like isoform X3 | ||||
STRING | XP_009765270.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 9e-36 | lsd one like 2 |