PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016446530.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LSD
Protein Properties Length: 488aa    MW: 52955.6 Da    PI: 4.1836
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016446530.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD138.81.5e-12399423125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+Cr lL YP GA++V+C++C+tV
  XP_016446530.1 399 CGSCRQLLTYPQGAKLVKCSCCQTV 423
                     ************************9 PP

2zf-LSD1443.5e-14437461125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     CggC +lL+YP+GApsVRC++C ++
  XP_016446530.1 437 CGGCAVLLMYPYGAPSVRCSSCRHM 461
                     **********************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010538.5E-16396426IPR005735Zinc finger, LSD1-type
PfamPF069431.9E-10399423IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010538.7E-10434462IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-11437460IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MEENLNNIEE EEEEDEGPPP GFDSLAHTTN DETDEDEGPP PGWPSNPQQQ NQQLLLTTDV  60
EMGSREHESE DDEDGPPPGW NAVIPQKDSP STLRGTAAVT CDIEMEKKEE IVEDEDNGPP  120
PGWELAPQLQ PLQTSTSPSG TLQTLLADIE MEKKEEVVED EDNGPPPGWE LTPQLQPLQT  180
STPPSGTQQA LLADTAMEKK GEVVEDENNG PPPGWQLTPQ LQPLQTSTPP SGTQQALLAD  240
IKMEKKEEVA EDEDNGPPPG WQLIPQLQPL QTSTPPLGTQ QTLLADVEMG SKQQCAVEKE  300
GHPPGSSIPM AGHSSPPTPP PQSSSSVASS EMEMGSKQEG TKNEEVRPPI EKQEGTKNEE  360
VRPPIEKQPT SHLSRIKPTA PQSSLPATTS SAEMGQMVCG SCRQLLTYPQ GAKLVKCSCC  420
QTVNFVLEAH EVGQVKCGGC AVLLMYPYGA PSVRCSSCRH MTKIGAHNRR PPLSVQQARR  480
RHPSYQVH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754412e-45HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016446530.10.0PREDICTED: protein piccolo-like isoform X3
TrEMBLA0A1S3Y3210.0A0A1S3Y321_TOBAC; protein piccolo-like isoform X3
STRINGXP_009765270.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.19e-36lsd one like 2