PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016446529.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LSD | ||||||||
Protein Properties | Length: 491aa MW: 53273 Da PI: 4.1836 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 38.8 | 1.5e-12 | 402 | 426 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL YP GA++V+C++C+tV XP_016446529.1 402 CGSCRQLLTYPQGAKLVKCSCCQTV 426 ************************9 PP | |||||||
2 | zf-LSD1 | 44 | 3.6e-14 | 440 | 464 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP+GApsVRC++C ++ XP_016446529.1 440 CGGCAVLLMYPYGAPSVRCSSCRHM 464 **********************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 8.6E-16 | 399 | 429 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.9E-10 | 402 | 426 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 8.8E-10 | 437 | 465 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.1E-11 | 440 | 463 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009617 | Biological Process | response to bacterium |
Sequence ? help Back to Top |
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Protein Sequence Length: 491 aa Download sequence Send to blast |
MEENLNNIEE EEEEDEGPPP GFDSLAHTTN DETDEDEGPP PGWPSNPQQQ NQQLLLTTDV 60 EMGSREHESE DDEDGPPPGW NAVIPQKDSP STLRGTAAVT CDIEMEKKEE IVEDEDNGPP 120 PGWELAPQLQ PLQTSTSPSG TLQTLLADIE MEKKEEVVED EDNGPPPGWE LTPQLQPLQT 180 STPPSGTQQA LLADTAMEKK GEVVEDENNG PPPGWQLTPQ LQPLQTSTPP SGTQQALLAD 240 IKMEKKEEVA EDEDNGPPPG WQLIPQLQPL QTSTPPLGTQ QTLLAAFVDV EMGSKQQCAV 300 EKEGHPPGSS IPMAGHSSPP TPPPQSSSSV ASSEMEMGSK QEGTKNEEVR PPIEKQEGTK 360 NEEVRPPIEK QPTSHLSRIK PTAPQSSLPA TTSSAEMGQM VCGSCRQLLT YPQGAKLVKC 420 SCCQTVNFVL EAHEVGQVKC GGCAVLLMYP YGAPSVRCSS CRHMTKIGAH NRRPPLSVQQ 480 ARRRHPSYQV H |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 2e-45 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016446529.1 | 0.0 | PREDICTED: arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1-like isoform X2 | ||||
TrEMBL | A0A1S3Y317 | 0.0 | A0A1S3Y317_TOBAC; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1-like isoform X2 | ||||
STRING | XP_009765270.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 9e-36 | lsd one like 2 |