PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016446528.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LSD

Protein Properties

Length: 493aa MW: 53457.2 Da PI: 4.1836

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016446528.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38.8	1.5e-12	404	428	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL YP GA++V+C++C+tV XP_016446528.1 404 CGSCRQLLTYPQGAKLVKCSCCQTV 428 ************************9 PP
2	zf-LSD1	44	3.6e-14	442	466	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP+GApsVRC++C ++ XP_016446528.1 442 CGGCAVLLMYPYGAPSVRCSSCRHM 466 **********************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	8.6E-16	401	431	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.9E-10	404	428	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	8.8E-10	439	467	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.1E-11	442	465	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MEENLNNIEE EEEEDEGPPP GFDSLAHTTN DETDEDEGPP PGWPSNPQQQ NQQLLLTTDV 60 EMGSREHESE DDEDGPPPGW NAVIPQKDSP STLRGTAAVT CDIEMEKKEE IVEDEDNGPP 120 PGWELAPQLQ PLQTSTSPSG TLQTLLADIE MEKKEEVVED EDNGPPPGWE LTPQLQPLQT 180 STPPSGTQQA LLADTAMEKK GEVVEDENNG PPPGWQLTPQ LQPLQTSTPP SGTQQALLAD 240 IKMEKKEEVA EDEDNGPPPG WQLIPQLQPL QTSTPPLGTQ QTLLAALAFV DVEMGSKQQC 300 AVEKEGHPPG SSIPMAGHSS PPTPPPQSSS SVASSEMEMG SKQEGTKNEE VRPPIEKQEG 360 TKNEEVRPPI EKQPTSHLSR IKPTAPQSSL PATTSSAEMG QMVCGSCRQL LTYPQGAKLV 420 KCSCCQTVNF VLEAHEVGQV KCGGCAVLLM YPYGAPSVRC SSCRHMTKIG AHNRRPPLSV 480 QQARRRHPSY QVH

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MEENLNNIEE EEEEDEGPPP GFDSLAHTTN DETDEDEGPP PGWPSNPQQQ NQQLLLTTDV  60
EMGSREHESE DDEDGPPPGW NAVIPQKDSP STLRGTAAVT CDIEMEKKEE IVEDEDNGPP  120
PGWELAPQLQ PLQTSTSPSG TLQTLLADIE MEKKEEVVED EDNGPPPGWE LTPQLQPLQT  180
STPPSGTQQA LLADTAMEKK GEVVEDENNG PPPGWQLTPQ LQPLQTSTPP SGTQQALLAD  240
IKMEKKEEVA EDEDNGPPPG WQLIPQLQPL QTSTPPLGTQ QTLLAALAFV DVEMGSKQQC  300
AVEKEGHPPG SSIPMAGHSS PPTPPPQSSS SVASSEMEMG SKQEGTKNEE VRPPIEKQEG  360
TKNEEVRPPI EKQPTSHLSR IKPTAPQSSL PATTSSAEMG QMVCGSCRQL LTYPQGAKLV  420
KCSCCQTVNF VLEAHEVGQV KCGGCAVLLM YPYGAPSVRC SSCRHMTKIG AHNRRPPLSV  480
QQARRRHPSY QVH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	2e-45	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016446528.1	0.0	PREDICTED: protein piccolo-like isoform X1
TrEMBL	A0A1S3Y2U3	0.0	A0A1S3Y2U3_TOBAC; protein piccolo-like isoform X1
STRING	XP_009765270.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11642	22	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	1e-35	lsd one like 2