PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016445811.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 276aa    MW: 32220.8 Da    PI: 5.67
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016445811.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding476e-152067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd++l+ ++ ++G  +W+  +r  g+ R++k+c++rw +yl
   XP_016445811.1 20 KGAWSPEEDQKLKSYIMRYGIWNWSHMPRFAGLSRSGKSCRLRWMNYL 67
                     79******************99************************97 PP
2Myb_DNA-binding47.34.8e-1573118148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eE e  ++  ++lG++ W+ Iar+++ gRt++++k++++++l
   XP_016445811.1  73 RGPFSVEERETVIKMYQELGNR-WSEIARRLP-GRTDNEVKNFFHTHL 118
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.9481567IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-211570IPR009057Homeodomain-like
SuperFamilySSF466893.8E-2818114IPR009057Homeodomain-like
SMARTSM007173.7E-121969IPR001005SANT/Myb domain
PfamPF002494.0E-132067IPR001005SANT/Myb domain
CDDcd001671.95E-92267No hitNo description
PROSITE profilePS5129421.17268122IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.0E-2471120IPR009057Homeodomain-like
SMARTSM007172.8E-1572120IPR001005SANT/Myb domain
PfamPF002494.7E-1373118IPR001005SANT/Myb domain
CDDcd001672.25E-1075118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MPSVPPQQQQ KSTNMEEIKK GAWSPEEDQK LKSYIMRYGI WNWSHMPRFA GLSRSGKSCR  60
LRWMNYLRPD VKRGPFSVEE RETVIKMYQE LGNRWSEIAR RLPGRTDNEV KNFFHTHLKK  120
HFGLKYDAPL KSTTNGARSN KRVLKKTKGN ERTNVEKRSP DHVSSSDSNS IITCEENQMM  180
DVTMNLYQTD GDCYNVVDQP NIEMEISPVI LESNPDDGDT YNSNCQQLHD QFEYSHDISE  240
YFSSFDSDGQ FDMSSSWFDV LWDAETSDFF REVITS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-241712024126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754425e-32HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHG9755155e-32HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016445811.10.0PREDICTED: transcription factor WER-like
TrEMBLA0A1S3Y0R70.0A0A1S3Y0R7_TOBAC; transcription factor WER-like
STRINGXP_009594710.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.13e-46myb domain protein 14