PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016445596.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 217aa MW: 24674 Da PI: 9.6578 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.3 | 1.5e-21 | 10 | 57 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ie k qvtfskRr g++KKA+EL++LC++e+a+i+fs+ k++ + XP_016445596.1 10 KIEVKNHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPARKVFSF 57 68888999**********************************999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.235 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.7E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.88E-27 | 1 | 77 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.14E-33 | 2 | 75 | No hit | No description |
PRINTS | PR00404 | 9.1E-18 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.1E-18 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.1E-18 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MGRQKIKISK IEVKNHLQVT FSKRRSGLFK KASELCTLCG VEIAIIVFSP ARKVFSFGHP 60 NVESIVDRFL SRNHNPISNS SLHLVEAHRN ASIHELNLQL TQIISELEVE KKKGESLDQM 120 RKTSQSQYWW EAPIMQLALH ELQQLKDSIE DLKKNATNQA SKFMVEISNS SPYFDINGNG 180 IYDNYDIKSA RNLVASNNLH NHNFGFHSAG TFGSPFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-15 | 1 | 87 | 1 | 87 | MEF2C |
5f28_B | 2e-15 | 1 | 87 | 1 | 87 | MEF2C |
5f28_C | 2e-15 | 1 | 87 | 1 | 87 | MEF2C |
5f28_D | 2e-15 | 1 | 87 | 1 | 87 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009601694.1 | 1e-161 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Refseq | XP_016445596.1 | 1e-161 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 9e-58 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1S3Y045 | 1e-159 | A0A1S3Y045_TOBAC; agamous-like MADS-box protein AGL62 | ||||
STRING | XP_009601694.1 | 1e-160 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-60 | AGAMOUS-like 62 |
Publications ? help Back to Top | |||
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