PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016445464.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 242aa MW: 27399.3 Da PI: 4.7317 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.5 | 3.9e-19 | 138 | 188 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg++ tae+Aa a+++a+ +++g XP_016445464.1 138 RYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEDAALAYDKAAYRIRG 188 6********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 5.9E-38 | 138 | 202 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-31 | 138 | 196 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.35E-31 | 138 | 196 | No hit | No description |
PROSITE profile | PS51032 | 24.46 | 138 | 196 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.7E-13 | 138 | 188 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-23 | 138 | 198 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 9.7E-11 | 139 | 150 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.7E-11 | 162 | 178 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MMFENSEFIT NFELLESIKQ HLLEDWSSPE NSTSLYSTET QIFPNLFSDN WENIPINEND 60 TENRYIYSNA ITSAVKIEPE FPNFLENDTE NMYIYDNAIN EPTQSAVKTE PEVSVSSPEM 120 YNFKAPAAVP PPAKKSERYR GVRQRPWGKF AAEIRDPAKN GARVWLGTYE TAEDAALAYD 180 KAAYRIRGSR ALLNFPLRVN SGEPEPVRVG SKRSSLSPES SSSSSSENVS TKRTKKVAQL 240 YN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-39 | 135 | 203 | 2 | 70 | ATERF1 |
3gcc_A | 5e-39 | 135 | 203 | 2 | 70 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016445464.1 | 1e-176 | PREDICTED: ethylene-responsive transcription factor 2-like | ||||
TrEMBL | A0A1S3Y026 | 1e-175 | A0A1S3Y026_TOBAC; ethylene-responsive transcription factor 2-like | ||||
STRING | XP_009611402.1 | 1e-173 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47220.1 | 2e-43 | ethylene responsive element binding factor 2 |