PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016445401.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ZF-HD
Protein Properties Length: 358aa    MW: 38734.8 Da    PI: 8.1766
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016445401.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer111.35.2e-3565122359
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                      v+YkeClkNhAaslGghavDGCgEfmps++++  ++++lkCaACgCHRnFHRre+ee
  XP_016445401.1  65 VVTYKECLKNHAASLGGHAVDGCGEFMPSPTANpVDPTSLKCAACGCHRNFHRREPEE 122
                     589******************************9*********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.3E-2966120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-2366122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.2E-3167119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.20768119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.86E-18211279IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-27212279IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-23220276IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MDISSNTNTA IATTVKSTEA EPETPIRIQP AKPISFSNGV LKRHNSLHLP HHHGFNNNHH  60
HHAVVVTYKE CLKNHAASLG GHAVDGCGEF MPSPTANPVD PTSLKCAACG CHRNFHRREP  120
EEPVLPNQNT IPALEYQPHH RHHPPPPPPP HHGGSGGHSS PNSSSPPPIS SAYYPASAPH  180
MLLALSAGLS GPPAETNPLI SPSSNPMSSA HLSNPNGSGR KRFRTKFTQD QKERMLEFAE  240
KVEWKIQKRD EELISDFCSK IGVEKGVLKV WMHNNKCKKD QATAAAAVNA VASTNNLNGN  300
NANGFGFISR NNTDAIASEF HIHRESSNDN DKNHNHHLHN NDSVSAHGVT TNGSSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-192212761873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1546640.0AF154664.1 Nicotiana tabacum clone PR56 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009797863.10.0PREDICTED: zinc-finger homeodomain protein 9-like
RefseqXP_016445401.10.0PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LXG02e-74ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A1S3XZM80.0A0A1S3XZM8_TOBAC; zinc-finger homeodomain protein 9-like
TrEMBLA0A1U7Y3Z80.0A0A1U7Y3Z8_NICSY; zinc-finger homeodomain protein 9-like
STRINGXP_009797863.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.11e-68homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]