PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016445331.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 493aa MW: 53659.8 Da PI: 5.8955 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.7 | 1.5e-39 | 148 | 208 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s XP_016445331.1 148 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKNSA 208 7899******************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-30 | 145 | 205 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.0E-32 | 150 | 206 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.919 | 152 | 206 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 154 | 190 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence Send to blast |
MREVKDPEIK LFGKKIALPE NGKILSVIVS GEDSGVEKPS GAKEISSGWD RDPCLVDKEA 60 SSPDESDDGS EYENEKADKD QVTGELTEDT SEEKDQDQVM KESENPKSPS ESENKPKTPP 120 IDDESLTVKA SKTENDATDS QQKTLKKPDK ILPCPRCNSM DTKFCYYNNY NVNQPRHFCK 180 SCQRYWTAGG TMRNVPVGAG RRKNKNSASH CHHIMISEAL QAARIDPPNG FHHPMLKPNG 240 TVLSFGPDSP LCESMASVMN LAEKKTPNGI RNGYYKPEHK NPSYIGGENG DDCSSGSSVS 300 TNSMAEGIKN RPPEAVMQTI NGFPSPVPCL PGVPWPFPYA AVPFPAMNPA AFPMPFCPPP 360 YWNCNVPGPW SIPWLAPPPT TANQNGSGSS PNSPLGKHSR DGDLLRPNNP EGQKNSEGSV 420 LVPKTLRIDD PDEAAKSSIW STLGISYDSV SRGGLFKGFQ PKSSEKDHPA TTSPVLQANP 480 VAFSRSLSFQ ERA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016445331.1 | 0.0 | PREDICTED: cyclic dof factor 1-like | ||||
TrEMBL | A0A1S3XZF9 | 0.0 | A0A1S3XZF9_TOBAC; cyclic dof factor 1-like | ||||
STRING | XP_009619973.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA532 | 24 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47500.1 | 2e-97 | cycling DOF factor 3 |