PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016445331.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Dof
Protein Properties Length: 493aa    MW: 53659.8 Da    PI: 5.8955
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016445331.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.71.5e-39148208262
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s 
  XP_016445331.1 148 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKNSA 208
                     7899******************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-30145205IPR003851Zinc finger, Dof-type
PfamPF027013.0E-32150206IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.919152206IPR003851Zinc finger, Dof-type
PROSITE patternPS013610154190IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MREVKDPEIK LFGKKIALPE NGKILSVIVS GEDSGVEKPS GAKEISSGWD RDPCLVDKEA  60
SSPDESDDGS EYENEKADKD QVTGELTEDT SEEKDQDQVM KESENPKSPS ESENKPKTPP  120
IDDESLTVKA SKTENDATDS QQKTLKKPDK ILPCPRCNSM DTKFCYYNNY NVNQPRHFCK  180
SCQRYWTAGG TMRNVPVGAG RRKNKNSASH CHHIMISEAL QAARIDPPNG FHHPMLKPNG  240
TVLSFGPDSP LCESMASVMN LAEKKTPNGI RNGYYKPEHK NPSYIGGENG DDCSSGSSVS  300
TNSMAEGIKN RPPEAVMQTI NGFPSPVPCL PGVPWPFPYA AVPFPAMNPA AFPMPFCPPP  360
YWNCNVPGPW SIPWLAPPPT TANQNGSGSS PNSPLGKHSR DGDLLRPNNP EGQKNSEGSV  420
LVPKTLRIDD PDEAAKSSIW STLGISYDSV SRGGLFKGFQ PKSSEKDHPA TTSPVLQANP  480
VAFSRSLSFQ ERA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016445331.10.0PREDICTED: cyclic dof factor 1-like
TrEMBLA0A1S3XZF90.0A0A1S3XZF9_TOBAC; cyclic dof factor 1-like
STRINGXP_009619973.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53224122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47500.12e-97cycling DOF factor 3