PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016445188.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 137aa    MW: 15717.4 Da    PI: 4.6653
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016445188.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.22e-083361955
             AP2 19 Irdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    +rdp+    r  r++lg+f t e+A +a+++a+ +++g
  XP_016445188.1  3 VRDPK----RtGRVWLGTFNTVEDATRAYDKAAIEFRG 36
                    67762....358***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.948144IPR001471AP2/ERF domain
SMARTSM003803.2E-10250IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-18244IPR001471AP2/ERF domain
CDDcd000182.70E-17243No hitNo description
SuperFamilySSF541712.09E-11344IPR016177DNA-binding domain
PfamPF008472.9E-4836IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MEVRDPKRTG RVWLGTFNTV EDATRAYDKA AIEFRGPRAK LNFSFADYTS IQQHNTITSI  60
SCSKQQQQEP VQLEQRNKTD AGIGKEEEFW DQLMKWDNEI QECLNMMDFN GHSSDSAGNL  120
EGVLLIASDD HFQLNKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740221e-154AB274022.1 Nicotiana tabacum WRAF2 mRNA for wound-responsive AP2 like factor 2, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016445188.11e-100PREDICTED: ethylene-responsive transcription factor ERF109-like
TrEMBLA0A1S3XZ272e-99A0A1S3XZ27_TOBAC; ethylene-responsive transcription factor ERF109-like
STRINGXP_009622476.12e-94(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2405322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.13e-16related to AP2 6l