PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016445024.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 186aa    MW: 20653.1 Da    PI: 4.6713
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016445024.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.1e-172372155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s y+G+r+  ++g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  XP_016445024.1 23 SVYRGIRR--RNGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAALALKG 72
                    78****85..47*********843...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-112372IPR001471AP2/ERF domain
CDDcd000181.27E-172382No hitNo description
SuperFamilySSF541713.07E-192382IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-272482IPR001471AP2/ERF domain
PROSITE profilePS5103220.7192480IPR001471AP2/ERF domain
SMARTSM003807.9E-272486IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MWSNHCPTNS TAISNRSEQG RHSVYRGIRR RNGKWVSEIR EPRKTTRIWL GTYPTPEMAA  60
AAYDVAALAL KGPDTPLNFP DSMCSYTMPN SLTAADIRAA AANAAAVRAP QLESEEARHQ  120
TECQPEVGDE GAVGQEFFDE EEVFGMPRLL VDMAEAMLVS PPRMKTTSCE ESPEYSDASY  180
TLWSYP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1322801272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016445024.11e-138PREDICTED: ethylene-responsive transcription factor ERF025-like
SwissprotQ9FJ904e-48ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A1S3XYV61e-136A0A1S3XYV6_TOBAC; ethylene-responsive transcription factor ERF025-like
STRINGXP_009591044.11e-136(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-40ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]