PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016445018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ARR-B | ||||||||
Protein Properties | Length: 644aa MW: 71519.4 Da PI: 6.1158 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 76.5 | 3.6e-24 | 241 | 294 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k++++Wt+ LH++F+ea++ + G +kA+Pk+il+ mkv+gLt+e+v+SHLQkYR+ XP_016445018.1 241 KAKVVWTNSLHNKFLEAIRDI-GFDKAVPKKILDQMKVPGLTRENVASHLQKYRI 294 6799*****************.********************************6 PP | |||||||
2 | Response_reg | 71.7 | 3e-24 | 51 | 159 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 +l+vdD+ + +++++ +l+k +y +v +++++ +al +l+ k +Dl+++D+ mp+m+G+el + i++e +lp+++++a ++e ++l+ l+ G XP_016445018.1 51 ILVVDDDVVCLSIVAMILKKCKY-QVVTVKHPMDALSILRIKGgsFDLVVVDVHMPDMNGFELQQVITNEF-ELPVVLMSADDKEGTILKGLDGG 143 89*********************.9999***********666666**********************9999.9********************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a fl+Kp++ ++l++ XP_016445018.1 144 AAFFLVKPISVDDLRD 159 *************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 1.8E-32 | 48 | 172 | No hit | No description |
SuperFamily | SSF52172 | 1.71E-30 | 48 | 165 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 3.8E-25 | 49 | 161 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 36.389 | 50 | 165 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.5E-20 | 51 | 159 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.86E-23 | 52 | 165 | No hit | No description |
PROSITE profile | PS51294 | 10.567 | 238 | 297 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.97E-17 | 239 | 298 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.9E-24 | 240 | 298 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.9E-24 | 241 | 294 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.9E-6 | 244 | 293 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 644 aa Download sequence Send to blast |
MEGLLALAWK FGLQCLLHFQ KSRGSSGRRR HTVSLCQSME VETLINRSIS ILVVDDDVVC 60 LSIVAMILKK CKYQVVTVKH PMDALSILRI KGGSFDLVVV DVHMPDMNGF ELQQVITNEF 120 ELPVVLMSAD DKEGTILKGL DGGAAFFLVK PISVDDLRDL WQYALLQKKK GKRVVLEEID 180 CLEKSSNCNK KSLHEVGESV SSINENCYQH IKKEKSKRKS ARTQRNADKD NSGNSAAPFK 240 KAKVVWTNSL HNKFLEAIRD IGFDKAVPKK ILDQMKVPGL TRENVASHLQ KYRIFLERVS 300 DACCRIQAAD TSLGMLSQEK FGLQKQFSEN TTNPRSLIHT ANNGSSSFRT QQTRQTIPSG 360 YEQAQLFLNE DNLGNITHSN ENPLYKANQL PSTMKAKNYQ TGSSAYEDIS SQLMNGTTST 420 QVRRMLSGNP ANRLSGRNLL ALGTNGITMH ATLNGNLNFL RDGFADDQCG TNFTQNNDAD 480 EASTLFTGHM NVIGKSQHDS EQCLAQEASS SDGFDGEKQC SAILSDHIDE ETYMQLPSFV 540 NGVCRGQEVD AMLDPVCNFS EFHNTNATQQ SRGIGDLSVS FVNQGNVLPH QQQDHIGHTE 600 PAEDGMSQLH NVFSYPTEQC KDEEFLELVL ASSPYEDDQN PDGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-19 | 240 | 300 | 4 | 64 | ARR10-B |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC149488 | 1e-34 | AC149488.1 Solanum demissum chromosome 11 clone PGEC542, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016445017.1 | 0.0 | PREDICTED: putative two-component response regulator-like APRR6 isoform X1 | ||||
Refseq | XP_016445018.1 | 0.0 | PREDICTED: putative two-component response regulator-like APRR6 isoform X1 | ||||
Refseq | XP_016445019.1 | 0.0 | PREDICTED: putative two-component response regulator-like APRR6 isoform X1 | ||||
TrEMBL | A0A1S3XZ88 | 0.0 | A0A1S3XZ88_TOBAC; putative two-component response regulator-like APRR6 isoform X1 | ||||
STRING | XP_009603673.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 2e-51 | response regulator 2 |