PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016445000.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 696aa    MW: 77102.7 Da    PI: 7.3913
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016445000.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3758.7e-24123224199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF   + +
  XP_016445000.1 123 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILAKDVHGEVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL--RAE 213
                     89****************************986445444..8999*********************************************..448 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++ l+v+++r+
  XP_016445000.1 214 NGDLCVGIRRA 224
                     8999****997 PP
2Auxin_resp113.91.5e-37291374183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa+ a+ +++FevvY+Prast+eFvvk++ v++a++v++s GmRfkm fetedss++++ +Gt+++v+  dp++WpnS+Wr+L+
  XP_016445000.1 291 AAKLAACGQPFEVVYYPRASTPEFVVKASAVRAAMRVQWSSGMRFKMPFETEDSSRISWfMGTISSVHVEDPIHWPNSPWRLLQ 374
                     6889999***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-38114227IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.29E-30116227IPR015300DNA-binding pseudobarrel domain
CDDcd100177.70E-22122223No hitNo description
PfamPF023624.5E-22123224IPR003340B3 DNA binding domain
PROSITE profilePS5086313.239123225IPR003340B3 DNA binding domain
SMARTSM010199.0E-23123225IPR003340B3 DNA binding domain
PfamPF065071.7E-32291374IPR010525Auxin response factor
PROSITE profilePS5174517.352610690IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MINIMNPVNK PMNEVEKGLD PQLWHACAGG MVQMPPLNSK AFYFPQGHAE HAHKNVDFGV  60
FPKIPPLTLC RVSSIRYLAD TETDEVYAKI RLIPLKGNEC DVEDDAGFLG LDKNENQEKP  120
NSFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSAEPPV QTILAKDVHG EVWKFRHIYR  180
GTPRRHLLTT GWSNFVNQKK LVAGDSIVFL RAENGDLCVG IRRAKRGIGS GPEVPSGWNT  240
GPGNYASSLY HGFPGFLSED EKKFIRNGQA AKSDDGIRGK GKVRAESVVE AAKLAACGQP  300
FEVVYYPRAS TPEFVVKASA VRAAMRVQWS SGMRFKMPFE TEDSSRISWF MGTISSVHVE  360
DPIHWPNSPW RLLQVHWDEP DLLQNVKRVS PWLVELVSNM PPIHLSPFSP PRKKLRLPQP  420
PEFPMVGQLS MSSLLNNPLS PSSPLCCISD NIPAGIQGAR HAQCGLPSSD VHFNKLQAGL  480
LPFGFKELER SVPPSRLLKG GSFMTSFDND ENISCLLTMG NTSPTSTKRK ETQTPTFMLF  540
GRPILTEQQM SLSCSSETVG NSLSNGNPEK MMNLSEGSGS AVIHNGPPEN SSGEVLPWYK  600
DQKLEFRMET GHCKVFMESE DVGRTLDLSV LGSYEELYKK LADMFGVGTS EMLSNVLYQD  660
LTGTVKHTGD EPFSQFVKTA RRLTILTDSG SDNIRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-751939551388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016445000.10.0PREDICTED: auxin response factor 16-like
RefseqXP_016445001.10.0PREDICTED: auxin response factor 16-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1S3XYM50.0A0A1S3XYM5_TOBAC; Auxin response factor
STRINGXP_009784518.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]