PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016444814.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 467aa MW: 51419.5 Da PI: 7.4794 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.4 | 7e-18 | 55 | 102 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l d+++++G g+W+++ ++ g+ R++k+c++rw ++l XP_016444814.1 55 KGPWTKEEDAILMDYIRKHGEGNWSAVQKHSGLARCGKSCRLRWANHL 102 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 40.3 | 7.5e-13 | 108 | 151 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+ T+eE + ++++++G++ W+ Ia++++ gRt++++k++w++ XP_016444814.1 108 KGALTPEEVRHINELHAKMGNK-WAQIAAKLP-GRTDNEIKNYWNT 151 6788******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.961 | 50 | 106 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.94E-30 | 52 | 149 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-24 | 53 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-14 | 54 | 104 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-16 | 55 | 102 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.64E-12 | 57 | 102 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.3E-23 | 106 | 156 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.9E-12 | 107 | 155 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.113 | 107 | 157 | IPR017930 | Myb domain |
Pfam | PF00249 | 8.9E-12 | 108 | 151 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.77E-9 | 112 | 151 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
TDHRLFAPSL CGQLLQLLSS VNAVDRMTSK VGVDSPSVEE ASGGGSTRGG VPLKKGPWTK 60 EEDAILMDYI RKHGEGNWSA VQKHSGLARC GKSCRLRWAN HLRPDLKKGA LTPEEVRHIN 120 ELHAKMGNKW AQIAAKLPGR TDNEIKNYWN TRIKKRQRAG LQIYPPDISF QAFSENKQNK 180 ELGIFSSANS HPDFLPINGF TIPTVEFKKL EPSQLLYPRA LLNIAASSFF DIPATSLLAQ 240 GLSSSNTCSG LSTMHPSKRI RGSESWFFGL NDDLFQACHQ YQNDGSLLAQ SLGFSSSYTH 300 NLTSDHHPSF SVEIPGSHAP LNGNSSSSEP KWAKKLELPS LQIQMENWGS PSPLPSLESF 360 DTLIQSPPNE HADSGSLSPR NSGLLDAVLY ESQTSKASKN NSHQETSCDV DDSYPDLQET 420 QWGRYSDPIS PLGHSAASVL SKYTPMEVHW MSPPVNSDGG WLSRRLT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-32 | 50 | 156 | 1 | 107 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016444814.1 | 0.0 | PREDICTED: transcription factor GAMYB-like, partial | ||||
TrEMBL | A0A1S3XY87 | 0.0 | A0A1S3XY87_TOBAC; transcription factor GAMYB-like | ||||
STRING | XP_009628008.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2021 | 23 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11440.1 | 6e-85 | myb domain protein 65 |